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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTGTAATTTTCTCCTGTATCTGGTTCTGTTATCATCATTATTTTCCTGGTGTGGGGCAATCATGTCAGAGAGCGAGTTAGCAGTAATAAAACCAGAGgtacattttccattgctgtttctgttaattagagaggaaatgttgtgttcttatcttcattgcatcatttgggcctaaatcaagttttttggtgaactctgacag

Basic information

species Zea mays
transcript GRMZM2G029307_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029307_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g01660.1 (Oryza sativa), 5'ss of exon 2
--TCTTTGTAATTTTCTCCTGTATCTGGTTCTGTTATCATCATTATTTTCCTGGTGTGGGGCAATCATGTCAGAGAGCGAGTTAGCAGTAATAAAACCAGAGgtacattttccat------------------tgctgtttctgttaattagagaggaaatg-ttgtgttcttatct--tcattgcatcatttgggcctaaatcaagttttttggtgaactctgacag
  |  |||||| ||| ||  || | | ||  ||    | |  || |||  ||||  | || |||| |||||||| || ||||| ||||||||||| |||||||||      | ||                  |  | |||||||| ||| ||| |||||   ||||  ||    ||  |||     ||||||||  | || | || ||  ||| |||||||  ||||
GTTTCTTGTAAATTT-TCTGGTGTATTGTATTGGCGGCTTTGTTGTTTCTCTGGAATTGG-CAATAATGTCAGAAAGTGAGTTGGCAGTAATAAAGCCAGAGgtatgacccctatgcatttctagatcataactattttttctgtttattggaggggaaacaattgttctccagccttatcagctattcatttggttccaatttaatttcattg-tgaactc--acag