1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCCTACGTGCTCACCACTCCTCTCTACTACGTCAACGCTCCGCCGCATATGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctccacccacgattgcagcggctgtatttttgaacagttagttgtcgaacctacaaaagcaaattgcacatgcccgggttgcacgagatccact...
species | Zea mays |
transcript | GRMZM2G029055_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGTEST: gi|211024980|gb|FL404649.1|FL404649
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
EST: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGTEST: gi|211284183|gb|FL388287.1|FL388287
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
EST: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGTEST: gi|148957317|gb|EC903360.2|EC903360
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
EST: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGTEST: gi|91051766|gb|EB162184.1|EB162184
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
EST: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACTGGEST: gi|149076722|gb|EE165367.2|EE165367
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACAC-GG
EST: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGTEST: gi|78110212|gb|DV528627.1|DV528627
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
EST: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGTEST: gi|78086927|gb|DV515320.1|DV515320
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
EST: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGTEST: gi|211351239|gb|FL411973.1|FL411973
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
EST: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCTACGTGCTCACCACTCCTCTCTACTACGTCAACGCTCCGCCGCATATGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctccacccacgattgcagcggctgtatttttgaacagttagttgtcgaacctacaaaagcaaattgcacatgcccgggttgcacgagatccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagcaa