Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTACGTGCTCACCACTCCTCTCTACTACGTCAACGCTCCGCCGCATATGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctccacccacgattgcagcggctgtatttttgaacagttagttgtcgaacctacaaaagcaaattgcacatgcccgggttgcacgagatccact...

Basic information

species Zea mays
transcript GRMZM2G029055_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029055_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g11120.1 (Oryza sativa), 5'ss of exon 1
GCCCTACGTGCTCACCACTCCTCTCTACTACGTCAACGCTCCGCCGCATATGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcca---cccacgattgca-gcggctgtatttttgaacagttagttgtcgaacctacaaaagcaaattgcacatgcccgggttgcacgagatccact
||| |||||||||||||| || ||||||||||||||||| |||||||| ||||| ||||||||||||||||| || || |||||||||||||||||||||||||||  | |   |   | |    | |||   |  |||  |  |  ||  |  |||  | | | ||  | | |   |        |  | |   | | |   |
GCCATACGTGCTCACCACGCCGCTCTACTACGTCAACGCCCCGCCGCACATGGGGAGCGCCTACACCACCATTGCCGCCGACGCCATCGCCCGCTTCCAGgcaagcaactaaagcgagcaagcctatgcgcgcgcgtttgcgttccattgctgctcg--cgttctaatcccagtc-tagggattttgagtacgtcaaa-ctgtt

upper sequence: GRMZM2G029055_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 1
GCCCTACGTGCTCACCACTCCTCTCTACTACGTCAACGCTCCGCCGCATATGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGg--caagcctccacccacgattgcagcggctgtatttttgaacagttagttgtcgaacctacaaaagcaaattgcacatgcccgggttgcacgagatccact
 | ||  || ||||| || ||||||||||||||||| ||||| || || ||||| ||||| |||||||||||||| || || ||||| || ||||||||||  |||  ||| | |        ||  |  | || |||  |  |  ||  | | |  || |    || ||   |   |        ||| || | | |  ||
ACACTTTGTCCTCACTACCCCTCTCTACTACGTCAATGCTCCTCCCCACATGGGTAGCGCTTACACCACCATCGCTGCCGATGCCATTGCTCGCTTCCAGgttcaattctctatctctaccctcattgattttagtttaaattatgtaact-ttggtccaattccagaaatgggtcgacttggaaattggactaaa-ctgct

upper sequence: GRMZM2G029055_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 1
GCCCTACGTGCTCACCACTCCTCTCTACTACGTCAACGCTCCGCCGCATATGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcct--ccacccacgattgcagcggctgtatttttgaacagttagttgtcgaacctacaaaagcaaattgcacatgcccgggttgcacgagatccact--------------------------------------------
 ||||  || ||||| ||||||||||| |||||||| || || || || ||||| || || |||||||||||||| || || ||||| || ||||||||||  | | |  | | |        ||  |  | || |||  |  |  ||  | | |  || |    || ||  ||    ||       ||       ||  ||                                            
ACCCTTTGTCCTCACTACTCCTCTCTATTACGTCAATGCCCCTCCTCACATGGGTAGTGCTTACACCACCATCGCCGCCGATGCCATTGCTCGCTTCCAGgttaacttatctatctctaccctcattgattttagtttaaattatgtaact-ttggtccaattccagaaa--tgttggtgttttaactgtttattttctcctattagtacataataatataaggtttgcatagttgaatttgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148964149|gb|EE015315.2|EE015315
EST:     TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG                         AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
EST: gi|211024980|gb|FL404649.1|FL404649
EST:     TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG                         AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
EST: gi|211284183|gb|FL388287.1|FL388287
EST:     TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG                         AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
EST: gi|148957317|gb|EC903360.2|EC903360
EST:     TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG                         AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
EST: gi|91051766|gb|EB162184.1|EB162184
EST:     TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG                         AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACTGG
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACAC-GG
EST: gi|149076722|gb|EE165367.2|EE165367
EST:     TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG                         AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
EST: gi|78110212|gb|DV528627.1|DV528627
EST:     TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG                         AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
EST: gi|78086927|gb|DV515320.1|DV515320
EST:     TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG                         AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
EST: gi|211351239|gb|FL411973.1|FL411973
EST:     TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAG                         AGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT
genomic: TGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcctcc ... gtggttacagAGGTTGCTAGAGAAGAATGTTATATTTATTACCGGAACAGATGAACACGGT