Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAATACGTCTGCGGTGTCAAAATTTCCCTCTCAGCCGTGTTGCTCGCCGCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtctcccgatatcattcccgcatcaaggggtcttgtctttttgttgttgttgttggctaatgatgcgcacctgttgatgttgcggttccgcag

Basic information

species Zea mays
transcript GRMZM2G028883_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211057735|gb|FL416995.1|FL416995
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211284367|gb|FL403208.1|FL403208
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGGCGAGTGGCCCTTGTAAACTACGG
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATC-GGGCGAGTGGCCCTTGTAAACTACGG
EST: gi|211126538|gb|FL407328.1|FL407328
EST:     GCCACCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211050747|gb|FL374478.1|FL374478
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211221848|gb|FL407464.1|FL407464
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211313239|gb|FL392901.1|FL392901
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCRGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211165947|gb|FL375003.1|FL375003
EST:     GCCGCCCCGCCGTGTTGCTCGCTGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|29946618|gb|CB816240.1|CB816240
EST:     GCCGCCCCGCCG-GTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211494460|gb|FL428226.1|FL428226
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|88748517|gb|DY532658.1|DY532658
EST:     GCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211360514|gb|FL385267.1|FL385267
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211143214|gb|FL408633.1|FL408633
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|4753346|gb|AI657251.1|AI657251
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211439750|gb|FL418522.1|FL418522
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211026841|gb|FL370336.1|FL370336
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGG-CCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211150585|gb|FL418274.1|FL418274
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211428796|gb|FL392518.1|FL392518
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211434204|gb|FL402849.1|FL402849
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211493633|gb|FL397220.1|FL397220
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211209573|gb|FL394638.1|FL394638
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211323108|gb|FL368450.1|FL368450
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211479851|gb|FL422852.1|FL422852
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211209617|gb|FL397452.1|FL397452
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAG-CAAAATG                         CCGTTCAAGAGGTTCGTGYGAGATCGGGCGAGTGGCCCTTGTAAACTACGG
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTG-GAGATCGGGCGAGTGGCCCTTGTAAACTACGG
EST: gi|211131969|gb|FL389091.1|FL389091
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211057286|gb|FL401201.1|FL401201
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTTCAAGAGGTTCGTGGAGATCGGGCGAGTGG-CCTTGTAAACTACGG
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCG-TTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGG
EST: gi|161589438|gb|EY963410.1|EY963410
EST:     CGGCAGCCAAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTGAACTACGG
genomic: CGGCAGCC-AAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGG
EST: gi|211471273|gb|FL385453.1|FL385453
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACAGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|87152982|gb|DY397771.1|DY397771
EST:     CGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: CGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|9952872|gb|BE639455.1|BE639455
EST:     GGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTGAACTACGGC
genomic: GGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211397824|gb|FL389336.1|FL389336
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211429166|gb|FL408885.1|FL408885
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211369531|gb|FL423738.1|FL423738
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211249692|gb|FL397010.1|FL397010
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|60345598|gb|DN212571.1|DN212571
EST:     GCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211499585|gb|FL402049.1|FL402049
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211292336|gb|FL387401.1|FL387401
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACAGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|71304846|gb|DR788536.1|DR788536
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211126324|gb|FL371825.1|FL371825
EST:     GCCGCCCCGCCGTGKTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|29945582|gb|CB815713.1|CB815713
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211299168|gb|FL411036.1|FL411036
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCSAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|14243478|gb|BG841143.2|BG841143
EST:     GCCGCCCCGCCGTGTTGTTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAAAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211314987|gb|FL374729.1|FL374729
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211199119|gb|FL383383.1|FL383383
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|32911085|gb|CF015897.1|CF015897
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211106642|gb|FL406859.1|FL406859
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211212939|gb|FL424469.1|FL424469
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211364207|gb|FL423702.1|FL423702
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211516414|gb|FL409528.1|FL409528
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211194737|gb|FL410101.1|FL410101
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|8102651|gb|AW927299.1|AW927299
EST:     CACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTGAACTACGGC
genomic: CACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211199115|gb|FL383379.1|FL383379
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211363431|gb|FL397066.1|FL397066
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|32164912|gb|CD670230.1|CD670230
EST:     GCCGCCCCGCCG-GTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211341885|gb|FL422753.1|FL422753
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211524495|gb|FL408985.1|FL408985
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211485156|gb|FL401976.1|FL401976
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211217095|gb|FL383478.1|FL383478
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211330632|gb|FL423266.1|FL423266
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|19436589|gb|BM952999.1|BM952999
EST:     CGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGCTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: CGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211325363|gb|FL370100.1|FL370100
EST:     GCCGCCCCGCCGTGTTGCTCTCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211219621|gb|FL402180.1|FL402180
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|60339771|gb|DN206744.1|DN206744
EST:     CCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: CCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|20300679|gb|BQ163622.1|BQ163622
EST:     CGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: CGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|67011948|gb|CO440697.1|CO440697
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211153455|gb|FL403820.1|FL403820
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211257174|gb|FL417863.1|FL417863
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211137666|gb|FL400355.1|FL400355
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211162916|gb|FL392798.1|FL392798
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211163059|gb|FL403919.1|FL403919
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211123282|gb|FL408216.1|FL408216
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|31997790|gb|CD661772.1|CD661772
EST:     GCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211518868|gb|FL413409.1|FL413409
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211478910|gb|FL382320.1|FL382320
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|211060388|gb|FL405184.1|FL405184
EST:     GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|32164911|gb|CD670229.1|CD670229
EST:     CGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: CGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|22490936|gb|BU050859.1|BU050859
EST:     GACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCG-GGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
EST: gi|83278782|gb|DV942790.1|DV942790
EST:     GCCGCCCCGCCGTGTTGCTCGCAGACACCGCCCCGCCGGCAGCCAAAATG                         CCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC
genomic: GCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 951

TATAATACGTCTGCGGTGTCAAAATTTCCCTCTCAGCCGTGTTGCTCGCCGCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGCAAGGAGTATGGCCGCCTCGTCGTCATCGTCGACGTCGTCGACCAGAACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 724

TATAATACGTCTGCGGTGTCAAAATTTCCCTCTCAGCCGTGTTGCTCGCCGCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGCAAGGAGTATGGCCGCCTCGTCGTCATCGTCGACGTCGTCGACCAGAACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 404

TATAATACGTCTGCGGTGTCAAAATTTCCCTCTCAGCCGTGTTGCTCGCCGCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGCAAGGAGTATGGCCGCCTCGTCGTCATCGTCGACGTCGTCGACCAGAACA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 288

TATAATACGTCTGCGGTGTCAAAATTTCCCTCTCAGCCGTGTTGCTCGCCGCCGCCCCGCCGTGTTGCTCGCCGACACCGCCCCGCCGGCAGCCAAAATGgtatatgtct ... ggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGCAAGGAGTATGGCCGCCTCGTCGTCATCGTCGACGTCGTCGACCAGAACA