1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCCTGCAAGGTCGGAGGCGGTGATGCAGAATGGGGGCATCCGAATGTTGCTGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAAgtaattagttgtttctctctgcctgttattttttagtgttcttgcttgcatttaccatcttctcacattagttaatgccaccatgaag
species | Zea mays |
transcript | GRMZM2G028796_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAA GCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGATEST: gi|211104622|gb|FL034747.1|FL034747
genomic: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAAgtaattagtt ... caccatgaagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGAT
EST: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAA GCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGATEST: gi|211104625|gb|FL034750.1|FL034750
genomic: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAAgtaattagtt ... caccatgaagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGAT
EST: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAA GCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGATEST: gi|211104626|gb|FL034751.1|FL034751
genomic: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAAgtaattagtt ... caccatgaagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGAT
EST: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAA GCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGATEST: gi|211104621|gb|FL034746.1|FL034746
genomic: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAAgtaattagtt ... caccatgaagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGAT
EST: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAA GCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGATEST: gi|211104623|gb|FL034748.1|FL034748
genomic: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAAgtaattagtt ... caccatgaagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGAT
EST: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAA GCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGATEST: gi|211102157|gb|FL034743.1|FL034743
genomic: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAAgtaattagtt ... caccatgaagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGAT
EST: TGGACCTTGCAAGGNGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAA GCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGATEST: gi|211104620|gb|FL034745.1|FL034745
genomic: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAAgtaattagtt ... caccatgaagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGAT
EST: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAA GCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGATEST: gi|211104619|gb|FL034744.1|FL034744
genomic: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAAgtaattagtt ... caccatgaagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGAT
EST: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAA GCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGAT
genomic: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAAgtaattagtt ... caccatgaagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGCAAGGTCGGAGGCGGTGATGCAGAATGGGGGCATCCGAATGTTGCTGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAGTCTGAAGCAGCAAAAgtaattagttgtttctctctgcctgttattttttagtgttcttgcttgcatttaccatcttctcacattagttaatgccaccatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC