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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCCGGCTGGAAGGCCATGGGGGCTAGGGCTACCTCCCCTCCGCCATGGAGGCGTCACTGCCTCTGCCGCGCCCTCCACTTCCTCGTTCTCTTGCTCTGgtcagtacgcacttcttgccggttcttatggttctttcgctccacccgtaattttagttcatcgattcgttggagttgtactattttgcagggtttcccg...

Basic information

species Zea mays
transcript GRMZM2G028307_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74237284|gb|DT645198.1|DT645198
EST:     AGGCGTCACTGCCTCTGCCGCGCCCTCCACTTCCTCGTTCTCTTGCTCTG                         GGGTACTTCCGAGGCAAACAAAGAACAGGCCATGTTGCCTCCAAGAGGGTG
genomic: AGGCGTCACTGCCTCTGCCGCGCCCTCCACTTCCTCGTTCTCTTGCTCTGgtcagtacgc ... taaatttcagGGGTACTTCCGAGGCAAACAAAGAACAGGCCATGTTGCCTCCAAGAGGGTG
EST: gi|71436528|gb|DR817578.1|DR817578
EST:     AGGCGTCACTGCCTCTGCCGCGCCCTCCACTTCCTCGTTCTCTTGCTCTG                         GGGTACTTCCGAGGCAAACAAAGAACAGGCCATGTTGCCTCCAAGAGGGTG
genomic: AGGCGTCACTGCCTCTGCCGCGCCCTCCACTTCCTCGTTCTCTTGCTCTGgtcagtacgc ... taaatttcagGGGTACTTCCGAGGCAAACAAAGAACAGGCCATGTTGCCTCCAAGAGGGTG
EST: gi|50328271|gb|CO523397.1|CO523397
EST:     AGGCGTCACTGCCTCTGCCGCGCCCTCCACTTCCTCGTTCTCTTGCTCTG                         GGGTACTTCCGAGGCAAACAAAGAACAGGCCATGTTGCCTCCAAGAGGGTG
genomic: AGGCGTCACTGCCTCTGCCGCGCCCTCCACTTCCTCGTTCTCTTGCTCTGgtcagtacgc ... taaatttcagGGGTACTTCCGAGGCAAACAAAGAACAGGCCATGTTGCCTCCAAGAGGGTG
EST: gi|71444847|gb|DR825897.1|DR825897
EST:     AGGCGTCACTGCCTCTGCCGCGCCCTCCACTTCCTCGTTCTCTTGCTCTG                         GGGTACTTCCGAGGCAAACAAAGAACAGGCCATGTTGCCTCCAAGAGGGTG
genomic: AGGCGTCACTGCCTCTGCCGCGCCCTCCACTTCCTCGTTCTCTTGCTCTGgtcagtacgc ... taaatttcagGGGTACTTCCGAGGCAAACAAAGAACAGGCCATGTTGCCTCCAAGAGGGTG