Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGGGGTTTCCAAGGACGCGTCACAGGATGACCTCAAGAAGGCCTACCGCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgcgagctggtcatttcgtctggctccgacctgtccgcggcggggagtagtaggcgggttgtcaggtttgcggcgatgttgagacggtttggc...

Basic information

species Zea mays
transcript GRMZM2G028218_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028218_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G38790.1 (Glycine max), 5'ss of exon 1
CCTGGGGGTTTCCAAGGACGCGTCACAGGATGACCTCAAGAAGGCCTACCGCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgcgagctggtcatttcgt-ctggctccgacctgtccgcggcgggga--gtagtaggc-gggttgtcaggtttgcggcgatgt-tgagacggtttggc
||| || ||||||||| |||| || | ||||||| | |||||||| |||   || |||||||| |||||||| || ||||| ||||| || |||||||||||     |    | || |  | |  |  | | |  ||    | |     |  ||  || ||||   |  |||| |  ||    | |||   | || |  ||    
CCTCGGCGTTTCCAAGAACGCTTCGCCGGATGACTTAAAGAAGGCTTACAAGAAAGCCGCCATTAAGAACCATCCTGACAAAGGCGGGGATCCCGAGAAGgtattttcaatcgttgattttctgatatttgatttgatgaattctgaatgatgatggttgtagtttgaattgttat-ttgattgtgattcattagtcaatt----

upper sequence: GRMZM2G028218_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA11G17930.1 (Glycine max), 5'ss of exon 1
CCTGGGGGTTTCCAAGGACGCGTCACAGGATGACCTCAAGAAGGCCTACCGCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgcgagctggtcatttcgtctggctccgacctgtccgcggcggggagtagtaggcgggttg-tcaggtttgcggcgatgttgagacggtttggc
||| || || || ||| |||| || |||||||| || |||||||| |||   || |||||||||||||| ||||| ||||||||||| || ||||||||||| |      |   || | |||     |  |||    |      |     |||||   |  | | |   | ||| ||      |   |     | |     
CCTCGGCGTCTCGAAGAACGCTTCGCAGGATGATCTGAAGAAGGCTTACAAGAAAGCCGCCATCAAGAATCACCCTGACAAGGGCGGTGATCCCGAGAAGgtaatt-tttgttgtgctaattcttattcactcaattcgcgattcaattaggagtttcattcagttaaattagggttcaattaagaatttattgatagaat

upper sequence: GRMZM2G028218_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA12G10150.2 (Glycine max), 5'ss of exon 1
CCTGGGGGTTTCCAAGGACGCGTCACAGGATGACCTCAAGAAGGCCTACCGCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgcgagctggtcatttcgtctggctccgacctgtccgcggcggggagtagt-aggcgggttgtcaggtttgcggcgatgttgagacggtttggc--
||| || || |||||| |||| || |||||||| || |||||||| |||   || |||||||| ||||| ||||||||||||||||| || ||||||||||| |     ||   |  |||||   ||      |||     | | |         ||| |     |   ||||  ||  |    | |||| |   || ||   
CCTCGGCGTCTCCAAGAACGCTTCGCAGGATGATCTGAAGAAGGCTTACAAGAAAGCCGCCATTAAGAATCACCCCGACAAGGGCGGTGATCCCGAGAAGgtaatt-ttcgtaattctcattcactcaattcgcgattcaactgggtgttcattcagttaaattagggttcag--ttatgaatttattgatagaattagggtt

upper sequence: GRMZM2G028218_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv06s0080g01230.t01 (Vitis vinifera), 5'ss of exon 1
CCTGGGGGTTTCCAAGGACGCGTCACAGGATGACCTCAAGAAGGCCTACCGCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgcga-gctggtcatttcgtctggctccgacctgtccgcggcggggagtagtaggcgggttgtcaggtttgcggcgatgttgagacggtttggc
 ||||| || || ||| |||| || |||||||| ||||||||||| || || || |||||||||||||| || || |||||||| || || || |||||||| |   |     | |  | || || | |   |  |  ||       |          |||| |  | ||   | ||  ||   | || |      ||   
ACTGGGAGTGTCAAAGAACGCTTCTCAGGATGATCTCAAGAAGGCGTATCGTAAAGCCGCCATCAAGAATCATCCTGACAAGGGAGGTGATCCAGAGAAGgtaaattcattccgtttcttatgtcatttttttttgttctaaattttgtttcttagtctagg-gtttggttttggttttggtttttttaatctctctttct

upper sequence: GRMZM2G028218_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv13s0073g00560.t01 (Vitis vinifera), 5'ss of exon 2
CCTGGGGGTTTCCAAGGACGCGTCACAGGATGACCTCAAGAAGGCCTACCGCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgcgagctggtcatttcgtctggctccgacctgtccgcggcggggagtagtaggcgggttgtcaggtttgcggcgatgttgagacggtttggc----
 || || ||||||||| |||| || ||||| || || |||||||| ||  | ||||| || |||||||||||||| |||||||| || ||||| ||||||||    |    |     ||| ||  | ||| |    |  |    | |   |  | |  |    | |||   |  | | |      |   ||   | | ||    
TCTTGGAGTTTCCAAGAACGCTTCGCAGGAAGATCTGAAGAAGGCGTATAGGAAGGCGGCGATCAAGAACCACCCTGACAAGGGTGGTGACCCGGAGAAGgtactggtttta-tgattcagtttctttggtt---gctggaaaactgaatgatgaaacaaaatgattggatgtatcgtgttagcttcctgaaattatagcaaaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211088780|gb|FK991006.1|FK991006
EST:     GCAAGGCCGCCWTCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211091230|gb|FK991018.1|FK991018
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211534692|gb|FK990951.1|FK990951
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211537699|gb|FK990963.1|FK990963
EST:     GCAA-GCCGCCATCAAGAACCACCCCGACAA-GGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211537695|gb|FK990959.1|FK990959
EST:     GCAA-GYCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211088788|gb|FK991014.1|FK991014
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211531693|gb|FK990940.1|FK990940
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211088782|gb|FK991008.1|FK991008
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211534685|gb|FK990944.1|FK990944
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211088779|gb|FK991005.1|FK991005
EST:     GCAA-GCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211088787|gb|FK991013.1|FK991013
EST:     GCAAG-CCGCCATCAAGAACCACCCCGACAAGG-CGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211531683|gb|FK990930.1|FK990930
EST:     CAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCYGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAA
genomic: CAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCC-GAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGA-
EST: gi|211537701|gb|FK990965.1|FK990965
EST:     GCAAG-CCGCCATCAAGAACCACCCCGACAAGG-CGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211091232|gb|FK991020.1|FK991020
EST:     GCAA-GCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|28361546|gb|CB239902.1|CB239902
EST:     GACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211086334|gb|FK991002.1|FK991002
EST:     GCAA-GCCGMCATCAAGAACCACCCCGACAA-GGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211540713|gb|FK990978.1|FK990978
EST:     GCAA-GCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211540711|gb|FK990976.1|FK990976
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211088791|gb|FK991017.1|FK991017
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211531688|gb|FK990935.1|FK990935
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211537705|gb|FK990969.1|FK990969
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211531686|gb|FK990933.1|FK990933
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211531692|gb|FK990939.1|FK990939
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211540719|gb|FK990984.1|FK990984
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211540720|gb|FK990985.1|FK990985
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211531687|gb|FK990934.1|FK990934
EST:     GCAA-GCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAG
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAG-CTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAG
EST: gi|211088784|gb|FK991010.1|FK991010
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211540722|gb|FK990987.1|FK990987
EST:     GCAA-GCCGCCATCAAGAACCACCCCGACAA-GGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211086326|gb|FK990994.1|FK990994
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211531694|gb|FK990941.1|FK990941
EST:     GCAA-GCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211531684|gb|FK990931.1|FK990931
EST:     GCAA-GCCGCCATMAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211540717|gb|FK990982.1|FK990982
EST:     GCAAG-CCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211534694|gb|FK990953.1|FK990953
EST:     GCAAG-CCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211540709|gb|FK990974.1|FK990974
EST:     GCAA-GCCGCCATCAAGAACCACCCCGACAA-GGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211086321|gb|FK990989.1|FK990989
EST:     GCAA-GCCGCCATCAAGAACCACCCCGACAA-GGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211531682|gb|FK990929.1|FK990929
EST:     GCAAG-CCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATRAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211531691|gb|FK990938.1|FK990938
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211537696|gb|FK990960.1|FK990960
EST:     GCAAG-CCGCCATCAAGAACCACCCCGACAAGG-CGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAAGAG
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAA-GAG
EST: gi|211086324|gb|FK990992.1|FK990992
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTA
EST: gi|211537706|gb|FK990970.1|FK990970
EST:     GCAA-GCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211537697|gb|FK990961.1|FK990961
EST:     GCAA-GCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211088790|gb|FK991016.1|FK991016
EST:     CAAGGCCGCCATACAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: CAAGGCCGCCAT-CAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211086327|gb|FK990995.1|FK990995
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211540718|gb|FK990983.1|FK990983
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211534684|gb|FK990943.1|FK990943
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211086329|gb|FK990997.1|FK990997
EST:     GCAAG-CCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211086330|gb|FK990998.1|FK990998
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211088783|gb|FK991009.1|FK991009
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211537704|gb|FK990968.1|FK990968
EST:     GCAA-GCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211537694|gb|FK990958.1|FK990958
EST:     GCAA-GCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211534691|gb|FK990950.1|FK990950
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211088778|gb|FK991004.1|FK991004
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211531689|gb|FK990936.1|FK990936
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211534686|gb|FK990945.1|FK990945
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211531685|gb|FK990932.1|FK990932
EST:     GCAAG-CCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTNAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211091231|gb|FK991019.1|FK991019
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|87155560|gb|DY400349.1|DY400349
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGGTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
EST: gi|211540708|gb|FK990973.1|FK990973
EST:     GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAG                         TTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 410

CCTGGGGGTTTCCAAGGACGCGTCACAGGATGACCTCAAGAAGGCCTACCGCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGAGAGATCTATGACCAGTATGGCGAGGATGCCCTCAAGGAGGGAATGGGAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 114

CCTGGGGGTTTCCAAGGACGCGTCACAGGATGACCTCAAGAAGGCCTACCGCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGAGAGATCTATGACCAGTATGGCGAGGATGCCCTCAAGGAGGGAATGGGAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 92

CCTGGGGGTTTCCAAGGACGCGTCACAGGATGACCTCAAGAAGGCCTACCGCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGAGAGATCTATGACCAGTATGGCGAGGATGCCCTCAAGGAGGGAATGGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1157

CCTGGGGGTTTCCAAGGACGCGTCACAGGATGACCTCAAGAAGGCCTACCGCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgc ... tctatttcagTTCAAGGAGCTAGCTCAGGCTTATGAGGTCCTCAGCGACCCTGAAAAGAGAGAGATCTATGACCAGTATGGCGAGGATGCCCTCAAGGAGGGAATGGGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGGGGGTTTCCAAGGACGCGTCACAGGATGACCTCAAGAAGGCCTACCGCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGACCCCGAGAAGgtgagcgcgcgagctggtcatttcgtctggctccgacctgtccgcggcggggagtagtaggcgggttgtcaggtttgcggcgatgttgagacggtttggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC