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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACGGCGATGTACGGGAGGTCAGCCGCAAGTACTATGATCGCGACGTCTGCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccctgttgccctgctttccctgattccattacctccctaatctagaacgttcgagtagatctgggggttggtttgtcgcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcag

Basic information

species Zea mays
transcript GRMZM2G028096_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028096_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g39300.1 (Oryza sativa), 5'ss of exon 1
CAACGGCGATGTACGGGAGGTCAGCCGCAAGTACTATGATCGCGACGTCTGCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccctgt--tgccctgctttccctgattccattacctccctaatctagaacgttcgagtagatctgg-gggttggtttgtcgcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcag
||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||| ||| ||  | | ||   | ||||     |    || ||     ||| | |   | | |  |||    || || | || ||||| || |  ||||    || |  | ||| ||  |||| |               
CAACGGCGACGTGCGGGAGGTCAGCCGCAAGTACTACGACCGCGACGTCTGCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTGTTCCAGCTCACCgtgcgttccccgtgctactctcgatcccctcgcggcggagccccctc---ctatatc--cccactccatccatcggattcggttatcgcgtggctgatgtgcgcctgcgttgttttgtt-tttttgcag-------------

upper sequence: GRMZM2G028096_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA09G38430.1 (Glycine max), 5'ss of exon 1
CAACGGCGATGTACGGGAGGTCAGCCGCAAGTACTATGATCGCGACGTCTGCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccctgttgccctgctttccctgattccattacctccctaatctagaacgttcgagtagatctgggggttggtttgtcgcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcag
 |||||||| || || || ||||  ||||||||||| |||||||||||||| || |||||||||| ||| |||||||| ||||| ||||||||| | || |||    || | ||   | | |||| |  | |||    | | | |  | |||  | |        || |     ||  ||| |  | |  || || |||||  ||                                  
TAACGGCGACGTCCGTGAAGTCAATCGCAAGTACTACGATCGCGACGTCTGTCGTCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgta---acctttttcttccgttttctc--actcc---tcgttcttcgtttagggcttc-------atttttttatttatttattcc-ctttttctctgtttccgtttcag-----------------------------

upper sequence: GRMZM2G028096_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA18G47910.1 (Glycine max), 5'ss of exon 1
CAACGGCGATGTACGGGAGGTCAGCCGCAAGTACTATGATCGCGACGTCTGCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccctgttgccctgctttccctgattccattacctccctaatctagaacgttcgagtagatctgggggttggtttgtcgcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcag
 |||||||| || || || ||||  ||||||||||| |||||||||||||| ||||||||||||| ||| |||||||| ||||| ||||||||| | || |||    || | ||   | | |||| |  | |||    | | | |  | |||   | |  | ||  | |  |  |   ||| || |    |  ||  ||||  |                                   
TAACGGCGACGTCCGTGAAGTCAATCGCAAGTACTACGATCGCGACGTCTGTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGgta---acctttttcttccgttttctc--actcc---tcgttcttcgtttagg--gcttcattatttttttgattccctttctctc----tgtctccgtttcag-----------------------------------

upper sequence: GRMZM2G028096_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ22509 (Selaginella moellendorffii), 5'ss of exon 1
CAACGGCGATGTACGGGAGGTCAGCCGCAAGTACTATGATCGCGACGTCTGCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccctgttgc-cctgctttccctgattccattacctccctaatctagaacgttcgagtagatctgggggttggtttgtcgcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcag
|||||||||||| | ||| ||    ||||||| ||  ||||| || ||||| ||||||||||| || |||||||| || ||||| ||||||||||| || |||     |   | |   |  |    |  |||   ||| | |  ||  | |   ||                                                                                    
CAACGGCGATGTCCAGGAAGTGCAGCGCAAGTTCTCCGATCGGGATGTCTGTCGCCTCTACCTTGCTGGCCTCTGTCCTCACGATCTCTTCCAGCTCACGgtaatcatcgattagaatccacagcgctagatgttattgcat--ctggttttccacag----------------------------------------------------------------------------------

upper sequence: GRMZM2G028096_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ11722 (Selaginella moellendorffii), 5'ss of exon 1
CAACGGCGATGTACGGGAGGTCAGCCGCAAGTACTATGATCGCGACGTCTGCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccctgttgc-cctgctttccctgattccattacctccctaatctagaacgttcgagtagatctgggggttggtttgtcgcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcag
|||||||||||| | ||| ||    ||||||| ||  ||||| || ||||| ||||||||||| || |||||||| || ||||| ||||||||||| || |||     |     |   |  |    |  |||   ||| | |  ||  | |   ||                                                                                    
CAACGGCGATGTCCAGGAAGTGCAGCGCAAGTTCTCCGATCGGGATGTCTGTCGCCTCTACCTTGCTGGCCTCTGTCCTCACGATCTCTTCCAGCTCACGgtaatcatcgatcagaatccacagcgctagatgttattgcat--ctggttttccacag----------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211342903|gb|FL126052.1|FL126052
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|211342904|gb|FL126053.1|FL126053
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|211342898|gb|FL126047.1|FL126047
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|211342902|gb|FL126051.1|FL126051
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|211340511|gb|FL126040.1|FL126040
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|211342905|gb|FL126054.1|FL126054
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|211342900|gb|FL126049.1|FL126049
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|71764556|gb|DR962493.1|DR962493
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|74232160|gb|DT640074.1|DT640074
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|211342892|gb|FL126041.1|FL126041
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGTTTACC                         AGGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAG-ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAA
EST: gi|211340509|gb|FL126038.1|FL126038
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|211345283|gb|FL126056.1|FL126056
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTG
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTG
EST: gi|211342897|gb|FL126046.1|FL126046
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|211342893|gb|FL126042.1|FL126042
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|211342896|gb|FL126045.1|FL126045
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|211340507|gb|FL126036.1|FL126036
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|211342894|gb|FL126043.1|FL126043
EST:     GCCGCCTCTACCTCGCCGGSCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AAGATGGACATGGGGCCGTGCC-GAAGCTGCACTCGCTGC
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGC
EST: gi|211340508|gb|FL126037.1|FL126037
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AAGATGGACATGGGCCCGTGCC-GAAGCTGCACTC
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTC
EST: gi|211340510|gb|FL126039.1|FL126039
EST:     GCCGCCTCTACCTCGCCGGCCTCTGNCCCCACGACCTCTTCCAGNTTACC                         AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA