1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CATCAACCTGTTCGTCGCGCTGCTCTGCGCCTGCATCGTCCTGGGCCACCTCCTGGAGGAGAACCGCTGGGTTAACGAGTCCATCACCGCGCTCATCATCgtaagcaccatcgatgccgccgctgcactgcagctcctgctgcaaatgccgacgctccttacaacgtaatataatggctgcttttgcttgtccggccggcag
species | Zea mays |
transcript | GRMZM2G027851_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCTGGAGGAGAACCGCTGGGTTAACGAGTCCATCACCGCGCTCATCATC GGGCTGTGCACCGGCGTCGTGATCCTGCTGACCACCAAGGGGAAGAGCTCGEST: gi|50333105|gb|CO528231.1|CO528231
genomic: TCCTGGAGGAGAACCGCTGGGTTAACGAGTCCATCACCGCGCTCATCATCgtaagcacca ... cggccggcagGGGCTGTGCACCGGCGTCGTGATCCTGCTGACCACCAAGGGGAAGAGCTCG
EST: TCCTGGAGGAGAACCGCTGGGTTAACGAGTCCATCACCGCGCTCATCATC GGGCTGTGCACCGGCGTCGTGATCCTGCTGACCACCAAGGGGAAGAGCTCGEST: gi|93282181|gb|EB674445.1|EB674445
genomic: TCCTGGAGGAGAACCGCTGGGTTAACGAGTCCATCACCGCGCTCATCATCgtaagcacca ... cggccggcagGGGCTGTGCACCGGCGTCGTGATCCTGCTGACCACCAAGGGGAAGAGCTCG
EST: TCCTGGAGGAGAACCGCTGGGTTAACGAGTCCATCACCGCGCTCATCATC GGGCTGTGCACCGGCGTCGTGATCCTGCTGACCACCAAGGGGAAGAGCTCGEST: gi|78093453|gb|DV521827.1|DV521827
genomic: TCCTGGAGGAGAACCGCTGGGTTAACGAGTCCATCACCGCGCTCATCATCgtaagcacca ... cggccggcagGGGCTGTGCACCGGCGTCGTGATCCTGCTGACCACCAAGGGGAAGAGCTCG
EST: TCCTGGAGGAGAACCGCTGGGTTAACGAGTCCATCACCGCGCTCATCATC GGGCTGTGCACCGGCGTCGTGATCCTGCTGACCACCAAGGGGAAGAGCTCGEST: gi|78115473|gb|DV533861.1|DV533861
genomic: TCCTGGAGGAGAACCGCTGGGTTAACGAGTCCATCACCGCGCTCATCATCgtaagcacca ... cggccggcagGGGCTGTGCACCGGCGTCGTGATCCTGCTGACCACCAAGGGGAAGAGCTCG
EST: TCCTGGAGGAGAACCGCTGGGTTAACGAGTCCATCACCGCGCTCATCATC GGGCTGTGCACCGGCGTCGTGATCCTGCTGACCACCAAGGGGAAGAGCTCG
genomic: TCCTGGAGGAGAACCGCTGGGTTAACGAGTCCATCACCGCGCTCATCATCgtaagcacca ... cggccggcagGGGCTGTGCACCGGCGTCGTGATCCTGCTGACCACCAAGGGGAAGAGCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCAACCTGTTCGTCGCGCTGCTCTGCGCCTGCATCGTCCTGGGCCACCTCCTGGAGGAGAACCGCTGGGTTAACGAGTCCATCACCGCGCTCATCATCgtaagcaccatcgatgccgccgctgcactgcagctcctgctgcaaatgccgacgctccttacaacgtaatataatggctgcttttgcttgtccggccggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA