1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TACGGCGACGGCGCCGCCAACCAGGGACAGCTCTTCGAGGCGCTTAACATGGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACTgtgagttcttctgttaccatgtgcttggtcagctggtagtgctgtgatagtactgttcatcggtgggattccgaaatcgagagtgggctagtggagtgactttggagtacctggtgtatgcag
species | Zea mays |
transcript | GRMZM2G027627_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACT ATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACAEST: gi|101391487|gb|EB817679.1|EB817679
genomic: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACTgtgagttctt ... gtgtatgcagATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACA
EST: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACT ATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACAEST: gi|19057764|gb|BM736431.1|BM736431
genomic: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACTgtgagttctt ... gtgtatgcagATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACA
EST: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACT ATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACAEST: gi|91876001|gb|EB405958.1|EB405958
genomic: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACTgtgagttctt ... gtgtatgcagATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACA
EST: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTTTGCGAGAACAACCACT ATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACAEST: gi|78117771|gb|DV536158.1|DV536158
genomic: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACTgtgagttctt ... gtgtatgcagATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACA
EST: GCCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACT ATGGGATGGGGACGGCEST: gi|74232882|gb|DT640796.1|DT640796
genomic: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACTgtgagttctt ... gtgtatgcagATGGGATGGGGACGGC
EST: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACT ATGGGATGGGGACGGCAGAGTGGAGGGGCCTC-AAGAGCCCGGCTTACTANEST: gi|31349079|gb|CD433436.1|CD433436
genomic: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACTgtgagttctt ... gtgtatgcagATGGGATGGGGACGGCAGAGTGGAGGG-CCTCCAAGAGCCCGGCTTACTA-
EST: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACT ATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACAEST: gi|87152016|gb|DY396805.1|DY396805
genomic: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACTgtgagttctt ... gtgtatgcagATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACA
EST: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACT ATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACAEST: gi|19058234|gb|BM736901.1|BM736901
genomic: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACTgtgagttctt ... gtgtatgcagATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACA
EST: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACT ATGGGATGGGGCCGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACAEST: gi|211508252|gb|FL470983.1|FL470983
genomic: GGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACTgtgagttctt ... gtgtatgcagATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACA
EST: CTGCGAGAACAACCACT ATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACA
genomic: CTGCGAGAACAACCACTgtgagttctt ... gtgtatgcagATGGGATGGGGACGGCAGAGTGGAGGGCCTCCAAGAGCCCGGCTTACTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGGCGACGGCGCCGCCAACCAGGGACAGCTCTTCGAGGCGCTTAACATGGCCGCGCTCTGGAAGCTGCCTGTCATATTGGTCTGCGAGAACAACCACTgtgagttcttctgttaccatgtgcttggtcagctggtagtgctgtgatagtactgttcatcggtgggattccgaaatcgagagtgggctagtggagtgactttggagtacctggtgtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC