1 5' 3' | 2 5' 3' | 3 5' 3' |
AAACAAGCGTCAGCTCCGCCGGCTTCCTCCGCGCTTTCTCCCCGCCGCCGCCGCCGCCGCTCCTTCCCTACGCCAGGCACGCCAAGATGAAGCTCGTCAGgtaacgcccccccgtattcgttcgcccattgttagggttggcttccctttaccgttcctcgccgctccgtttgctacgaacttcgcctattttggtgctcatttcggtgcgcttcgccgcag
species | Zea mays |
transcript | GRMZM2G027571_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCTTCCCTACGCCAGGCACGCCAAGATGAAGCTCGTCAG GTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGGEST: gi|71762881|gb|DR960818.1|DR960818
genomic: TCCTTCCCTACGCCAGGCACGCCAAGATGAAGCTCGTCAGgtaacgcccc ... ttcgccgcagGTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGG
EST: TCCTTCCTTACGCCAGGCACGCCAAGATGAAGCTCGTCAG GTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGGEST: gi|71445025|gb|DR826075.1|DR826075
genomic: TCCTTCCCTACGCCAGGCACGCCAAGATGAAGCTCGTCAGgtaacgcccc ... ttcgccgcagGTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGG
EST: TCCTTCCCTACGCCAGGCACGCCAAGATGAAGCTCGTCAG GTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGGEST: gi|88749844|gb|DY533985.1|DY533985
genomic: TCCTTCCCTACGCCAGGCACGCCAAGATGAAGCTCGTCAGgtaacgcccc ... ttcgccgcagGTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGG
EST: CAAGATGAAGCTCGTCAG GTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGGEST: gi|149094950|gb|EE180534.2|EE180534
genomic: CAAGATGAAGCTCGTCAGgtaacgcccc ... ttcgccgcagGTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGG
EST: TCCTTCCCTACGCCAGGCACGCCAAGATGAAGCTCGTCAG GTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGGEST: gi|91057155|gb|EB167573.1|EB167573
genomic: TCCTTCCCTACGCCAGGCACGCCAAGATGAAGCTCGTCAGgtaacgcccc ... ttcgccgcagGTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGG
EST: CAAGATGAAGCTCGTCAG GTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGGEST: gi|50330686|gb|CO525812.1|CO525812
genomic: CAAGATGAAGCTCGTCAGgtaacgcccc ... ttcgccgcagGTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGG
EST: TCCTTCCCTACGCCAGGCACGCCAAGATGAAGCTCGTCAG GTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGGEST: gi|31558692|gb|CD527904.1|CD527904
genomic: TCCTTCCCTACGCCAGGCACGCCAAGATGAAGCTCGTCAGgtaacgcccc ... ttcgccgcagGTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGG
EST: TCCCTACGCCAGG-ACGCCAAGATGAAGCTCGTCAG GTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGGEST: gi|15590053|gb|BI674669.1|BI674669
genomic: TCCCTACGCCAGGCACGCCAAGATGAAGCTCGTCAGgtaacgcccc ... ttcgccgcagGTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGAGCTCAAGAACGG
EST: TCCTTCCCTACGCCAGGCACGCCAAGATGAAGCTCGTCAG GTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGANGCTCAAGAACG
genomic: TCCTTCCCTACGCCAGGCACGCCAAGATGAAGCTCGTCAGgtaacgcccc ... ttcgccgcagGTTCCTTATGAAGCTGAACAATGAGACGGTCACCATCGA-GCTCAAGAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACAAGCGTCAGCTCCGCCGGCTTCCTCCGCGCTTTCTCCCCGCCGCCGCCGCCGCCGCTCCTTCCCTACGCCAGGCACGCCAAGATGAAGCTCGTCAGgtaacgcccccccgtattcgttcgcccattgttagggttggcttccctttaccgttcctcgccgctccgtttgctacgaacttcgcctattttggtgctcatttcggtgcgcttcgccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - CGCCGCCG