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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGCGGGAGGGAACTCGCACGCGAAGGCAAATACGCTTTAGATCCCCCATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGgtctaattcgtgaggaatttgggttttctcggtggagcttggttccgctccgccttggagtggatttcggtgacttctttgttcagattgtttcgctcttgcag

Basic information

species Zea mays
transcript GRMZM2G027105_T07
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438000|gb|DR819050.1|DR819050
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438000|gb|DR819050.1|DR819050
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438000|gb|DR819050.1|DR819050
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438000|gb|DR819050.1|DR819050
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438000|gb|DR819050.1|DR819050
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438000|gb|DR819050.1|DR819050
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438000|gb|DR819050.1|DR819050
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438000|gb|DR819050.1|DR819050
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438000|gb|DR819050.1|DR819050
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71317875|gb|DR795704.1|DR795704
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71317875|gb|DR795704.1|DR795704
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71317875|gb|DR795704.1|DR795704
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71317875|gb|DR795704.1|DR795704
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71317875|gb|DR795704.1|DR795704
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71317875|gb|DR795704.1|DR795704
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71317875|gb|DR795704.1|DR795704
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71317875|gb|DR795704.1|DR795704
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71317875|gb|DR795704.1|DR795704
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|149082345|gb|EE171527.2|EE171527
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|149082345|gb|EE171527.2|EE171527
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|149082345|gb|EE171527.2|EE171527
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|149082345|gb|EE171527.2|EE171527
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|149082345|gb|EE171527.2|EE171527
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|149082345|gb|EE171527.2|EE171527
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|149082345|gb|EE171527.2|EE171527
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|149082345|gb|EE171527.2|EE171527
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|149082345|gb|EE171527.2|EE171527
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|211060877|gb|FK967412.1|FK967412
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTNTTCTCCGTTTTG                         GCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACG
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGgtctaattcg ... gctcttgcagGCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACG
EST: gi|50333998|gb|CO529124.1|CO529124
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|50333998|gb|CO529124.1|CO529124
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|50333998|gb|CO529124.1|CO529124
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|50333998|gb|CO529124.1|CO529124
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|50333998|gb|CO529124.1|CO529124
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|50333998|gb|CO529124.1|CO529124
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|50333998|gb|CO529124.1|CO529124
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|50333998|gb|CO529124.1|CO529124
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|50333998|gb|CO529124.1|CO529124
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438201|gb|DR819251.1|DR819251
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438201|gb|DR819251.1|DR819251
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438201|gb|DR819251.1|DR819251
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438201|gb|DR819251.1|DR819251
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438201|gb|DR819251.1|DR819251
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438201|gb|DR819251.1|DR819251
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438201|gb|DR819251.1|DR819251
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438201|gb|DR819251.1|DR819251
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71438201|gb|DR819251.1|DR819251
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71449212|gb|DR830262.1|DR830262
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71449212|gb|DR830262.1|DR830262
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71449212|gb|DR830262.1|DR830262
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71449212|gb|DR830262.1|DR830262
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71449212|gb|DR830262.1|DR830262
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71449212|gb|DR830262.1|DR830262
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71449212|gb|DR830262.1|DR830262
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71449212|gb|DR830262.1|DR830262
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: gi|71449212|gb|DR830262.1|DR830262
EST:     ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG                         T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-