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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGCCTCTCCGACTTCGGCAACGTCTCGGCCGCGTTCCGCTCCGCGGACGCGCTCGGCGTGCAGTCCGTGCACGTCATTTCCTGTGATAGCAGCAAAAGgtgcagaggtgaagagtgaaactgaattgctacatatcacctcacttactgttgttcatttgtgtgtgtggggagaggcacaggtgaagagtgaaactga...

Basic information

species Zea mays
transcript GRMZM2G026869_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026869_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g40700.2 (Oryza sativa), 5'ss of exon 1
AAGGCCTCTCCGACTTCGGCAACGTCTCGGCCGCGTTCCGCTCCGCGGACGCGCTCGGCGTGCAGTCCGTGCACGTCATTTCCTGTGATAGCAGCAAAAGgtgcagaggtgaag--agtgaaactgaattgctacatatcacctcacttactgttgttcatttgtgtgtgtggggagaggcacaggtgaagagtgaaactga
| || ||||| |||||||| |||||||| || |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||| || | || |||||||||||||||||||   |       | | || ||    || ||     || || ||| ||  ||  || || | | ||  ||  ||  |   | |   | |  
AGGGGCTCTCTGACTTCGGGAACGTCTCCGCGGCGTTCCGGTCCGCCGACGCGCTAGGCGTGCAGTCCGTGCACGTCATCTCCTGCGACAACAACAAAAGgtgcagaggtgaaaccaaaatgtttaacttactcttcatgacagacattgctattgctcggtttggt-tgagcgaagtagccaagtagggaactatgaata-

upper sequence: GRMZM2G026869_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G26320.1 (Glycine max), 5'ss of exon 1
AAGGCCTCTCCGACTTCGGCAACGTCTCGGCCGCGTTCCGCTCCGCGGACGCGCTCGGCGTGCAGTCCGTGCACGTCATTTCCTGTGATAGCAGCAAAAGgtgcagaggtgaagagtgaaactgaattgctacatatcacctcacttactgttgttcatttgtgt----gtgtggggagaggcacaggtgaagagtgaaactga
|||| |||| |||||||||||||||||| ||| ||||||| |||||||||||||| ||||| |||||||| |||||| | || |||||   || |||||||||  |  | |    |||||| |  | |   ||   |    |||||     | | |    |||||    ||||    | |        | |||  |  |  | |
AAGGGCTCTGCGACTTCGGCAACGTCTCCGCCACGTTCCGGTCCGCGGACGCGCTTGGCGTCCAGTCCGTCCACGTCGTGTCGTGTGACGCCAACAAAAGgtgttgttgag----gtgaaattttagtagcactctttttttcactctagatagattgaatgtgtcatagtgtaatcataattcatattaaagcctccatttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6194738|gb|AW146842.1|AW146842
EST:     GTCATTTCCTGGGATAGCAGCAAAAG                         GTATAGAGACAACAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGACAT
genomic: GTCATTTCCTGTGATAGCAGCAAAAGgtgcagaggt ... gctttttcagGTATAGAGACAACAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGACAT