1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGGTGCCTCGAGCTCGTCGTCCGCGCTTCTGTGGCCACTGCCGGGAAGCATGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcagttcttatgcttcttctgaataagagatctgtgctcttggaggatgatatgagagtattgctgggaactttcag
species | Zea mays |
transcript | GRMZM2G026311_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|71297620|gb|DR784761.1|DR784761
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|21809752|gb|BQ668070.1|BQ668070
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|101383940|gb|EB814025.1|EB814025
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|78081791|gb|DV510203.1|DV510203
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|78079951|gb|DV508363.1|DV508363
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|78088648|gb|DV517041.1|DV517041
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|148962831|gb|EE013751.2|EE013751
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|78123039|gb|DV541423.1|DV541423
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGTTTGCAAAATGCGGCGGCTACTCGT GACCAATTCCGGGTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|78087906|gb|DV516299.1|DV516299
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|71306682|gb|DR789502.1|DR789502
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|26557976|gb|CA830211.1|CA830211
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGCGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|71330918|gb|DR802257.1|DR802257
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|76021477|gb|DT948647.1|DT948647
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|101399591|gb|EB821646.1|EB821646
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|76013036|gb|DT940206.1|DT940206
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|93011965|gb|EB637485.1|EB637485
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTCEST: gi|50336717|gb|CO531843.1|CO531843
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
EST: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGT GACTAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
genomic: TGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcag ... gaactttcagGACCAATTCCGGCTGGTCGGGGAGAATGTGGCCAAGGTGAGGACCGATGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTGCCTCGAGCTCGTCGTCCGCGCTTCTGTGGCCACTGCCGGGAAGCATGAGGAGGAGGCCTGGGATCGCTGGCTTGCAGAATGCGGCGGCTACTCGTgtacgtgcagttcttatgcttcttctgaataagagatctgtgctcttggaggatgatatgagagtattgctgggaactttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG