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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGGGCTTGTTAGTAGTCCAGTCGCTGCTATAAAATAAAGCGGCCATGAACCGTGTTCTCGCTCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAGgtaggtgatttgcgctcttgttcttctcttacccttgaccatgaaaatgcttccttttctctggttgagatcttcccctccccctgccggatctgaatct...

Basic information

species Zea mays
transcript GRMZM2G025528_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71435243|gb|DR816293.1|DR816293
EST:     ACCGTGTTCTCGCTCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAG                         GTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
genomic: ACCGTGTTCTCGCTCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAGgtaggtgatt ... gctgctgcagGTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
EST: gi|93014257|gb|EB639777.1|EB639777
EST:     CTCTGCTCACATGCCGCGAG                         GTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
genomic: CTCTGCTCACATGCCGCGAGgtaggtgatt ... gctgctgcagGTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
EST: gi|37426288|gb|CF650896.1|CF650896
EST:     TCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAG                         GTGCTCCATGAACAAGTGTCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
genomic: TCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAGgtaggtgatt ... gctgctgcagGTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
EST: gi|149072804|gb|EE161051.2|EE161051
EST:     ACCGTGTTCTCGCTCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAG                         GTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
genomic: ACCGTGTTCTCGCTCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAGgtaggtgatt ... gctgctgcagGTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
EST: gi|78076951|gb|DV505385.1|DV505385
EST:     ACCGTGTTCTCGCTCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAG                         GTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
genomic: ACCGTGTTCTCGCTCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAGgtaggtgatt ... gctgctgcagGTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG