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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGACTATCTCCCGCATCCGGCTAGAGAACTTCATGTGCCACTCCAGTCTCCACATCGAGCTCGACAAGCACGTGAATTTCATCACCGGCCAGAACGGAAgtacgcctcccaaaccctacccccgtccctctcgccatttatcgcggtgcctcctgacgcatggtgctcttctcttctcctacgacgtggcgttgcag

Basic information

species Zea mays
transcript GRMZM2G025340_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025340_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g03370.1 (Oryza sativa), 5'ss of exon 1
GGGACTATCTCCCGCATCCGGCTAGAGAACTTCATGTGCCACTCCAGTCTCCACATCGAGCTCGACAAGCACGTGAATTTCATCACCGGCCAGAACGGAAgtacgcctcccaaaccctacccccgtccctctcgccatttatcgcggtgcctcctgacgcatggtgctcttctcttctcctacgacgtggcgttgcag
||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| | | ||||| || |||||||||||||||||||| ||||||||||||   |||| || |   ||||  |  | | | |  |    |   |   ||    ||||  |    ||   || || ||  |        
GGGACGATCTCCCGCATCCGGCTGGAGAACTTCATGTGCCACTCCAGCCTCCACATCGAGCTCGGCCAACACGTCAACTTCATCACCGGCCAGAACGGCAgtacgcctcccct-ccctcccgcaaaccctagcctcctcttttcctcccctctcgatcgatccgtgccttatcatttctctccgtcgcag--------

upper sequence: GRMZM2G025340_T02 (Zea mays), 5'ss of exon 1
lower sequence: EDP00589 (Chlamydomonas reinhardtii), 5'ss of exon 2
----------------------------------GGGAC-TATCTCCCGCATCCGGCTAGAGAACTTCATGTGCCACTCCAGTCTCCACATCGAGCTCGA-------CAAGCACGTG--AATTTCATCACCGGCCAGAAC-----GGAAgtacgcctcc----caaa--ccctacccccgtccctctcgccatttatcgcggt---gcctcctgacgcatggtgctcttctcttctcctacgacg----tggcgttgcag------------------------
                                  ||| |   |    ||||||||| | ||||||||||||||||||||||   || |  |  |||| |        |  || ||||      | |  |   |   | |      |   || || | ||    ||    || ||| | | |   |   ||||   |  |||     |||| |    ||||   |  |  ||  | || | | |       || | ||||                         
ACCAGGGCTTCGTGGTCCGCGAGCACGGTCTGGCGGGTCACGTGGATCGCATCCGGGTGGAGAACTTCATGTGCCACTCCAACTTCGAGCTGCAGCTGGGgtgcgtgcgggcgcgtgcgggcatgaagatttggggggattttgggtcggtccgtcaccaggccagggcccttacgcgcatgttttcagccacgcagtgcgacccggcctgcctgtgcataccgggcggctgctttcttgccaaagctccggtggtgcacacacctgctcctcctgcccatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93012303|gb|EB637823.1|EB637823
EST:     CCACATCGAGCTCGACAAGCACGTGAATTTCATCACCGGCCAGAACGGAA                         GCGGGAAGAGCGCCATCCTTACGGCTCTCTGCGTCGCCTTTGGCTGCCGTG
genomic: CCACATCGAGCTCGACAAGCACGTGAATTTCATCACCGGCCAGAACGGAAgtacgcctcc ... ggcgttgcagGCGGGAAGAGCGCCATCCTTACGGCTCTCTGCGTCGCCTTTGGCTGCCGTG
EST: gi|6021095|gb|AW066023.1|AW066023
EST:     CCACATCGAGCTCGACAAGCACGTGAATTTCATCACCGGCCAGAACGGAA                         GCGGGAAGAGCGCCATCCTTACGGCTCTCTGCG-CG-CTTTGGCTGCCG-G
genomic: CCACATCGAGCTCGACAAGCACGTGAATTTCATCACCGGCCAGAACGGAAgtacgcctcc ... ggcgttgcagGCGGGAAGAGCGCCATCCTTACGGCTCTCTGCGTCGCCTTTGGCTGCCGTG