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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTGGAGGGGAGGAAGCGATGGAGGCGAGCGCCGGGCTGGTGGCCGGCTCCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGGgtacgcgcgcgcttcaatttttccggctggcttgcgagaggagcgagcgttacgttgctgttttttttccctttctaacttttgctgtctgctgtgtgcgcgctcgcgtgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G025231_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025231_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g24190.1 (Oryza sativa), 5'ss of exon 1
AAGTGGAGGGGAGGAAGCGATGGAGGCGAGCGCCGGGCTGGTGGCCGGCTCCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGGgtacgcgcgcgcttcaatttttccggctggcttgcgagaggagcgagcgttacgttgctgttttttttccctttctaacttttgctgtctgctgtgtgcgcgctcgcgtgcgtgcag
  | ||||| |  |  |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||     |    | |  |   |               | ||   ||  |  |||||||    |   |  ||| | | | |  | ||| || |  |||   || ||||
GGGAGGAGGAGGAGGGGCGATGGAGGCGAGCGCCGGTCTGGTCGCCGGCTCCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGGgtacgtgtgagc---ggtgccgctgattttttctt------------ctttttttttttaattttttttgggtctga--tttcgtttttttttttgttcgtggccgc---cgcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149001186|gb|EE038454.2|EE038454
EST:     CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGG                         CCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
genomic: CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGGgtacgcgcgc ... gtgcgtgcagCCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: gi|211344801|gb|FL219951.1|FL219951
EST:     CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGG                         CCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
genomic: CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGGgtacgcgcgc ... gtgcgtgcagCCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: gi|211344804|gb|FL219954.1|FL219954
EST:     CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGG                         CCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
genomic: CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGGgtacgcgcgc ... gtgcgtgcagCCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: gi|71309263|gb|DR790918.1|DR790918
EST:     CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGG                         CCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
genomic: CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGGgtacgcgcgc ... gtgcgtgcagCCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: gi|211344807|gb|FL219957.1|FL219957
EST:     CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGG                         CCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
genomic: CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGGgtacgcgcgc ... gtgcgtgcagCCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: gi|211342416|gb|FL219947.1|FL219947
EST:     CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGG                         CCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
genomic: CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGGgtacgcgcgc ... gtgcgtgcagCCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: gi|148963234|gb|EE014221.2|EE014221
EST:     CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGG                         CCGAAGCCGCCGCGGGAGCAGAACGGGCCGGTGTGCCAGATTTGCGGCGAC
genomic: CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGGgtacgcgcgc ... gtgcgtgcagCCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: gi|211344805|gb|FL219955.1|FL219955
EST:     CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGG                         CCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
genomic: CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGGgtacgcgcgc ... gtgcgtgcagCCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: gi|211342409|gb|FL219940.1|FL219940
EST:     CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGG                         CCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
genomic: CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGGgtacgcgcgc ... gtgcgtgcagCCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: gi|211344802|gb|FL219952.1|FL219952
EST:     CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGG                         CCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
genomic: CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGGgtacgcgcgc ... gtgcgtgcagCCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: gi|211342413|gb|FL219944.1|FL219944
EST:     CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGG                         CCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC
genomic: CCCACAACCGCAACGAGCTCGTCGTCATCCGCCGCGACGGCGATCCCGGGgtacgcgcgc ... gtgcgtgcagCCGAAGCCGCCGCGGGAGCAGAACGGGCAGGTGTGCCAGATTTGCGGCGAC