1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCGGATGCGGGAGGTGGCCGGCCTCATCCTTAGCTTCCCCGACGAGACGCCCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTGgtaccctccatttctacctctcggcgcctgggcctgggccggggcgctcgattcttttgcttactagctagtacaaggctagatgcgcgtgtgcctgattcgttgtctgtgtag
species | Zea mays |
transcript | GRMZM2G024686_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTG GCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCTEST: gi|71433314|gb|DR814364.1|DR814364
genomic: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTGgtaccctcca ... gtctgtgtagGCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCT
EST: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTG GCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCTEST: gi|93016258|gb|EB641778.1|EB641778
genomic: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTGgtaccctcca ... gtctgtgtagGCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCT
EST: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTG GCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCTEST: gi|94477550|gb|EB706508.1|EB706508
genomic: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTGgtaccctcca ... gtctgtgtagGCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCT
EST: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTG GCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCTEST: gi|148945409|gb|EC890633.2|EC890633
genomic: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTGgtaccctcca ... gtctgtgtagGCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCT
EST: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTG GCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCTEST: gi|71757140|gb|DR955077.1|DR955077
genomic: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTGgtaccctcca ... gtctgtgtagGCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCT
EST: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTG GCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCTEST: gi|91877619|gb|EB407576.1|EB407576
genomic: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTGgtaccctcca ... gtctgtgtagGCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCT
EST: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTG GCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCTEST: gi|149108954|gb|EE293062.2|EE293062
genomic: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTGgtaccctcca ... gtctgtgtagGCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCT
EST: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTG GCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCTEST: gi|148963115|gb|EE014078.2|EE014078
genomic: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTGgtaccctcca ... gtctgtgtagGCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCT
EST: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTG GCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCTEST: gi|149000754|gb|EE037974.2|EE037974
genomic: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTGgtaccctcca ... gtctgtgtagGCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCT
EST: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTG GCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCT
genomic: CCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTGgtaccctcca ... gtctgtgtagGCCGGCGAGAAGGCGGTGAGCTGCGGCGCCCCCAAGGCGTCCGAAATCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGATGCGGGAGGTGGCCGGCCTCATCCTTAGCTTCCCCGACGAGACGCCCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATAACCTCCTCCTGgtaccctccatttctacctctcggcgcctgggcctgggccggggcgctcgattcttttgcttactagctagtacaaggctagatgcgcgtgtgcctgattcgttgtctgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC