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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGATCTCCCCCAATCCGACCAAACCGGCAGAGCCGGGGGGCGGCGATGGCGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacccccccccccccccccttctccgtatccttgacattttgttcggttggatccagtagccgggagattcggaatcccgcgcgcgagttgggc...

Basic information

species Zea mays
transcript GRMZM2G024484_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024484_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g45090.2 (Oryza sativa), 5'ss of exon 1
CCGATCTCCCCCAATCCGACCAAACCGGCAGAGCCG---GGGGGCGGCGATGGCGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacccc-cccccccccccccttctccgtatccttgacattttgttcggttggatccagtagccgggagattcg-gaatcccgcgcgcgagttgggc
  ||||||||| |||||||     ||||  |||| |   || ||||| |||||||||||| || ||||| |||||||| || ||||||||   ||| ||||||||||||  |||| |||  | || | || |||| |  ||   |  | |     |  |||||||   | ||  |||   || |||  | |    ||  || |  
--GATCTCCCC-AATCCGAGAGCTCCGGAGGAGCAGCGCGGAGGCGGAGATGGCGCTGCGGCGAGCGCTGCTCAGATCTGCCGAGATCTCCCCCGATCGCAAGgtccgaatccccgcccttctccactctcctccttcccccccatctctctccggtctggatcccccaaccacgaggggcgcgaacgctgttaccgcctttg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211214195|gb|FL368409.1|FL368409
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGTTCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACACTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|148965143|gb|EE015959.2|EE015959
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|19057509|gb|BM736176.1|BM736176
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211455816|gb|FL370759.1|FL370759
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGTTCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACACTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211536718|gb|FL414652.1|FL414652
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|31353431|gb|CD437788.1|CD437788
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|148991405|gb|EE032904.2|EE032904
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211389788|gb|FL378712.1|FL378712
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGTTCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACACTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|32822926|gb|CD962776.1|CD962776
EST:     GATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: GATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|149106240|gb|EE291935.2|EE291935
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|148930769|gb|EC873096.2|EC873096
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211452649|gb|FL419417.1|FL419417
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGTTCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACACTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|87152655|gb|DY397444.1|DY397444
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|71303708|gb|DR787961.1|DR787961
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|71434504|gb|DR815554.1|DR815554
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|22491035|gb|BU050958.1|BU050958
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|148983196|gb|EE029146.2|EE029146
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211311529|gb|FL415337.1|FL415337
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGTTCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACACTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211500051|gb|FL422958.1|FL422958
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGTTCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACACTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|6564192|gb|AW231814.1|AW231814
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|149060866|gb|EE157320.2|EE157320
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211411528|gb|FL428556.1|FL428556
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211313501|gb|FL411486.1|FL411486
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211063188|gb|FL399935.1|FL399935
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGTTCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACACTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211518494|gb|FL392238.1|FL392238
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGTTCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACACTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211424319|gb|FL424647.1|FL424647
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACACAGG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211264323|gb|FL409728.1|FL409728
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211079836|gb|FL409620.1|FL409620
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|29167849|gb|CB411109.1|CB411109
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|148966975|gb|EE018119.2|EE018119
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211176533|gb|FL415736.1|FL415736
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGTTCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACACTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|149084311|gb|EE173749.2|EE173749
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|149108938|gb|EE293052.2|EE293052
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|67032182|gb|CO460931.1|CO460931
EST:     CGCTGCGACGGGCGTTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|211109309|gb|FL394519.1|FL394519
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGTTCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACACTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|149013631|gb|EE043092.2|EE043092
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|149085158|gb|EE174662.2|EE174662
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
EST: gi|148999106|gb|EE036016.2|EE036016
EST:     CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT
genomic: CGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 395

CCGATCTCCCCCAATCCGACCAAACCGGCAGAGCCGGGGGGCGGCGATGGCGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCTCTCAATGGTGCTGGCCTTTGTCCTGCTAGTAGATCACTTAGCACCCAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 393

CCGATCTCCCCCAATCCGACCAAACCGGCAGAGCCGGGGGGCGGCGATGGCGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCTCTCAATGGTGCTGGCCTTTGTCCTGCTAGTAGATCACTTAGCACCCAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 281

CCGATCTCCCCCAATCCGACCAAACCGGCAGAGCCGGGGGGCGGCGATGGCGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCTCTCAATGGTGCTGGCCTTTGTCCTGCTAGTAGATCACTTAGCACCCAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 450

CCGATCTCCCCCAATCCGACCAAACCGGCAGAGCCGGGGGGCGGCGATGGCGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacc ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCGTTCTCTCAATGGTGCTGGCCTTTGTCCTGCTAGTAGATCACTTAGCACCCAGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGATCTCCCCCAATCCGACCAAACCGGCAGAGCCGGGGGGCGGCGATGGCGCTGCGACGGGCGCTCCTCAGATCGGCAGAGATCTCTTTCGAACGCAAGgtccgacacccccccccccccccccttctccgtatccttgacattttgttcggttggatccagtagccgggagattcggaatcccgcgcgcgagttgggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccgcgc