1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTCGCAGTTCAGTTCACACTTCACAGGCGAGCAGCGACCATGGATACCCAAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctcttttatctcccaacgttcgcctctccccgaattatcttgttgcggcggccgtgcctccgctctgtcgttgtccggtcgcccggtgctttgattgaatcgactcggccgattgattccaatttccatccatgtag
species | Zea mays |
transcript | GRMZM2G024315_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|211043713|gb|FL336928.1|FL336928
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGEST: gi|211083193|gb|FL315299.1|FL315299
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTG
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|76014741|gb|DT941911.1|DT941911
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|8367347|gb|BE050292.1|BE050292
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|148966879|gb|EE017999.2|EE017999
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|149109975|gb|EE293785.2|EE293785
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|211115050|gb|FL357310.1|FL357310
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGG-T--TCCCCGCGTCAAGCTCGGCACCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCATACAACTCCEST: gi|76934797|gb|DV174022.1|DV174022
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|71438898|gb|DR819948.1|DR819948
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|211043426|gb|FL323571.1|FL323571
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|71430218|gb|DR811268.1|DR811268
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|19822526|gb|BQ048550.1|BQ048550
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCT-CCCGCGTCAAGCTCGGCATCCAGGGATTCGAG G-GTCCAAGCTGGGGTTCGGG-GCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|71438372|gb|DR819422.1|DR819422
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|211312220|gb|FL336750.1|FL336750
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGG-T--TCCCCGCGTCAAGCTCGGCACCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCATACAACTCCEST: gi|211482867|gb|FL313329.1|FL313329
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGG-T--TCCCCGCGTCAAGCTCGGCACCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCATACAACTCCEST: gi|71327903|gb|DR800586.1|DR800586
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|149014830|gb|EE044532.2|EE044532
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|148931634|gb|EC874774.2|EC874774
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|211525034|gb|FL310989.1|FL310989
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGG-T--TCCCCGCGTCAAGCTCGGCACCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCATACAACTCCEST: gi|13125896|gb|BG316571.1|BG316571
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: TCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCCEST: gi|78090111|gb|DV518485.1|DV518485
genomic: TCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
EST: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAG GTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
genomic: AAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctctttta ... atccatgtagGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTGACGGGCGCGTACAACTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGCAGTTCAGTTCACACTTCACAGGCGAGCAGCGACCATGGATACCCAAGCACGTCCGGTTCCTCCCCGCGTCAAGCTCGGCATCCAGGGATTCGAGgtctcttttatctcccaacgttcgcctctccccgaattatcttgttgcggcggccgtgcctccgctctgtcgttgtccggtcgcccggtgctttgattgaatcgactcggccgattgattccaatttccatccatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT