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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCACATCGTGGCGTCCATCGTGGGGAAGGCGCACCACCAGGACCCCCGCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccggccggcccgtagcgtggtttcattggccattcatcttccattcgattctctgctgcctgcctgcctgcctgctgcacttgtgtaacacgtgtgctagcacgaactctgcag

Basic information

species Zea mays
transcript GRMZM2G023840_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023840_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g36240.1 (Oryza sativa), 5'ss of exon 1
GCAGCACATCGTGGCGTCCATCGTGGGGAAGGCGCACCACCAGGACCCCCGCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccggc---cggcccgtagcgtggtttcattggcca--------ttcatcttccattcgattctctgctgc----ctgcctgcctgcctgctgcacttgtgtaacacgtgtgctagcacgaactctgcag------
 ||||| |||||||| || ||||| ||||| |||||  |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||    |    ||    |    |  | | |   || |            | |  | | | ||| | |   |      |   |   ||     | || | |    |   |||   ||  |  ||   ||||       
ACAGCAAATCGTGGCATCTATCGTCGGGAAAGCGCATTACCAGGACCCCCGCATGGCCGCATCCCTCCTCCGTCTCCACTTCCACGACTGCTTTGTCAAGgtacatagttacatatgggatttttttttctctaaagagcgaaaaaaagacctgtatctcttcccattttatatggaggagttcattaattgtacaatacaatggctcgatgagtgaattacaaaaaataatgcatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74235781|gb|DT643695.1|DT643695
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|149101123|gb|EE187230.2|EE187230
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|148959081|gb|EC905230.2|EC905230
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|78120686|gb|DV539070.1|DV539070
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|148991008|gb|EE032447.2|EE032447
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|71443597|gb|DR824647.1|DR824647
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|148959082|gb|EE010570.2|EE010570
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|71443598|gb|DR824648.1|DR824648
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|78120685|gb|DV539069.1|DV539069
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|211443835|gb|FL292083.1|FL292083
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAG
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAG
EST: gi|148991009|gb|EE032448.2|EE032448
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|78105910|gb|DV524328.1|DV524328
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|211443834|gb|FL292082.1|FL292082
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|148969082|gb|EE019808.2|EE019808
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|149110132|gb|EE293950.2|EE293950
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|74235780|gb|DT643694.1|DT643694
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|149086960|gb|EE176503.2|EE176503
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|110515219|gb|EE019807.1|EE019807
EST:     CCACTTCCACGACTGGTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGGACAGCAGCGGGTCCATCGTGAGCGA
genomic: CCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCT-GGACAGCAGCGGGTCCATCGTGAGCG-
EST: gi|91878196|gb|EB408153.1|EB408153
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|149099443|gb|EE185483.2|EE185483
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|148930079|gb|EE286029.2|EE286029
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|149104246|gb|EE289682.2|EE289682
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|149029237|gb|EE154701.2|EE154701
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|71422859|gb|DR805881.1|DR805881
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|149058844|gb|EE156864.2|EE156864
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|149058841|gb|EE156862.2|EE156862
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|78105911|gb|DV524329.1|DV524329
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|91878195|gb|EB408152.1|EB408152
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|148966976|gb|EE018120.2|EE018120
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|211443833|gb|FL292081.1|FL292081
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|148966977|gb|EE018121.2|EE018121
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|149110131|gb|EE293949.2|EE293949
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|149058842|gb|EE156863.2|EE156863
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|149104247|gb|EE289683.2|EE289683
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|149101124|gb|EE187231.2|EE187231
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|78082084|gb|DV510496.1|DV510496
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|149029238|gb|EE286192.2|EE286192
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|148933091|gb|EE286030.2|EE286030
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
EST: gi|149086961|gb|EE176504.2|EE176504
EST:     GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAG                         GGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA
genomic: GCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 12 (downstream exon)
Score: 5

GCAGCACATCGTGGCGTCCATCGTGGGGAAGGCGCACCACCAGGACCCCCGCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAAAAGCGGTCCAACCCCAACCGGGACTCCGCCAGGGGCTTCGAGGTCATCG


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 12

GCAGCACATCGTGGCGTCCATCGTGGGGAAGGCGCACCACCAGGACCCCCGCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAAAAGCGGTCCAACCCCAACCGGGACTCCGCCAGGGGCTTCGAGGTCATCG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 45

GCAGCACATCGTGGCGTCCATCGTGGGGAAGGCGCACCACCAGGACCCCCGCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccg ... aactctgcagGGCTGCGACGCTTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAAAAGCGGTCCAACCCCAACCGGGACTCCGCCAGGGGCTTCGAGGTCATCG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGCACATCGTGGCGTCCATCGTGGGGAAGGCGCACCACCAGGACCCCCGCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGgtacgtaccggccggcccgtagcgtggtttcattggccattcatcttccattcgattctctgctgcctgcctgcctgcctgctgcacttgtgtaacacgtgtgctagcacgaactctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC