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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGCAGCCGGAGGACGACGATGGGGTTCCTTCTCGCCGTGGCCGTCCTGCTCTCCGCGTGCGCGCAACAGTGCTCGGGCACGACAGACAGCCAGGACAgtgagtaccatgcattcagtaccatgcatttttcacttgctctcagatcgataccgttctcttctcttctctgctcgattgctctggcttctctctgccc...

Basic information

species Zea mays
transcript GRMZM2G023715_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148934000|gb|EC878001.2|EC878001
EST:     CTCTCCCGCGTGCGCGCAACAGTGCTCGGGCACGACAGACAGCCAGGACA                         CTTCCGTGCTCCCGGGCGTTGATGGAT
genomic: CTCTCC-GCGTGCGCGCAACAGTGCTCGGGCACGACAGACAGCCAGGACAgtgagtacca ... tccgttgcagCTTCCGTGCTCC-GGGCGTTGATGGAT
EST: gi|148981984|gb|EE028044.2|EE028044
EST:     GCTCTCCGCGTGCGCGCAACAGTGCTCGGGCACGACAGACAGCCAGGACA                         CTTCCGTGCTCCGGGCGTTGATGGATCAGTGGCAGAACGCGCCGCCGTCCT
genomic: GCTCTCCGCGTGCGCGCAACAGTGCTCGGGCACGACAGACAGCCAGGACAgtgagtacca ... tccgttgcagCTTCCGTGCTCCGGGCGTTGATGGATCAGTGGCAGAACGCGCCGCCGTCCT
EST: gi|148989786|gb|EE031799.2|EE031799
EST:     GCTCTCCGCGTGCGCGCAACAGTGCTCGGGCACGACAGACAGCCAGGACA                         CTTCCGTGCTCCGGGCGTTGATGGATCAGTGGCAGAACGCGCCGCCGTCCT
genomic: GCTCTCCGCGTGCGCGCAACAGTGCTCGGGCACGACAGACAGCCAGGACAgtgagtacca ... tccgttgcagCTTCCGTGCTCCGGGCGTTGATGGATCAGTGGCAGAACGCGCCGCCGTCCT
EST: gi|76291831|gb|DV031399.1|DV031399
EST:     GCTCTCCGCGTGCGCGCAACAGTGCTCGGGCACGACAGACAGCCAGGACA                         CTTCCGTGCTCCGGGCGTTGATGGATCAGTGGCAGAACGCGCCGCCGTCCT
genomic: GCTCTCCGCGTGCGCGCAACAGTGCTCGGGCACGACAGACAGCCAGGACAgtgagtacca ... tccgttgcagCTTCCGTGCTCCGGGCGTTGATGGATCAGTGGCAGAACGCGCCGCCGTCCT
EST: gi|71768121|gb|DR966058.1|DR966058
EST:     GCTCTCCGCGTGCGCGCAACAGTGCTCGGGCACGACAGACAGCCAGGACA                         CTTCCGTGCTCCGGGCGTTGATGGATCAGTGGCAGAACGCGCCGCCGTCCT
genomic: GCTCTCCGCGTGCGCGCAACAGTGCTCGGGCACGACAGACAGCCAGGACAgtgagtacca ... tccgttgcagCTTCCGTGCTCCGGGCGTTGATGGATCAGTGGCAGAACGCGCCGCCGTCCT
EST: gi|149076349|gb|EE164965.2|EE164965
EST:     GCTCTCCGCGTGCGCGCAGCAGTGCTCGGGCACGACAGACAGCCAGGACA                         CTTCCGTGCTCCGGGCGTTGATGGATCAGTGGCAGAACGCGCCGCCGTCCT
genomic: GCTCTCCGCGTGCGCGCAACAGTGCTCGGGCACGACAGACAGCCAGGACAgtgagtacca ... tccgttgcagCTTCCGTGCTCCGGGCGTTGATGGATCAGTGGCAGAACGCGCCGCCGTCCT