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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCGGCGCAAGCGCAACCATGGGGCTCTTCACCGTGACGAAGAAGGCCACCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcccgacttttccttatctatcccccgatctccgggccccagtccggatctctctgtttctgcgacgcggcgggttcgtgctcgattctggtg...

Basic information

species Zea mays
transcript GRMZM2G023289_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023289_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 1
CCGCGGCGCAAGCGCAACCATGGGGCTCTTCACCGTGACGAAGAAGGCCACCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgtt-cccttcccg-----acttttccttatctatcccccgatctccgggccccagtccggatctctctgtttctgcgacgcggcg-ggttcgtgctcgattctggtg
 || |   ||   ||| |||||| ||| ||| | |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||| ||||      || | | | |    ||||     |||||||   || |||   |   | | | | |||   |  |||| |   |||| | |||       
GCGTGAGCCAGCAGCAGCCATGGTGCTGTTCTCGGTGACGAAGAAGGCCACCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatcccaccaccacctcttcctcctcatccgattgtctccggtttcccgtcactagggccccgat-ctggatctaggcgcgacgcgtggtggatg------

upper sequence: GRMZM2G023289_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA05G34790.1 (Glycine max), 5'ss of exon 1
-CCGCGGCGCAAGCGCAACCATGGGGCTCTTCACCGTGACGAAGAAGGCCACCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttccct-tcccgacttttccttatctatcccccgatctccgggccccagtccggatctctctgtttctgcgacgcggcgggt-tcgtgctcgattctggtg----
  |  |  || ||| ||  ||||| ||||||||  ||  |       |  ||||| |||||||| ||||||||||| || ||||| || ||||||||||||||||| | || ||| ||   | | ||  ||   | ||   |  ||   |||     |        || | | || ||  || | | ||  || | ||   |     
TTCAGGTAGCCAGC-CAGTCATGGTGCTCTTCAATGTTTCACGCGTAGAGACCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgttccttatctcgatttgatcctttcc-tctatcaatt--catgctttagttt---ttctgagaattgtactactcgctggatcttgtcttcaaatcatatcttct

upper sequence: GRMZM2G023289_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G04890.1 (Glycine max), 5'ss of exon 1
CCGCGGC--GCAAGCGCAACCATGGGGCTCTTCACCGTGACGAAGAAGGCCACCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcccgacttttccttatctatcccccgatctccgggccccagtc---cggatctctctgtttctgcgacgcggcgggttcgtgctcgattctggtg
  |  ||  || ||| || |||||| ||||||||  ||  |       |  ||||| |||||||| || |||||||| || ||||| || |||||||||||||| |   || ||| |||  | | ||  ||   | |||  |  ||   |||    | |  |||  |   |        |    | |       ||||| |  | 
-GGTAGCCAGCCAGC-CAGCCATGGTGCTCTTCAATGTTTCACGCGTTGAGACCACTCCCTTCGATGGACAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgtccttatctcgattttatcctttcc-tctatcaatc--catgctttagtttttccgcgctcgatacattctttcttcttttgttcttctgacgattgtacta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211519862|gb|FL340800.1|FL340800
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211510167|gb|FL335461.1|FL335461
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|31353596|gb|CD437953.1|CD437953
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211114423|gb|FL039504.1|FL039504
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211538908|gb|FL379332.1|FL379332
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211245824|gb|FL313144.1|FL313144
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211468308|gb|FL243204.1|FL243204
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211409150|gb|FL322197.1|FL322197
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211520754|gb|FL372662.1|FL372662
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211348782|gb|FL410664.1|FL410664
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211514328|gb|FL308791.1|FL308791
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211320241|gb|FL338456.1|FL338456
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211430936|gb|FL367558.1|FL367558
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211143693|gb|FL324984.1|FL324984
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211113641|gb|FL039501.1|FL039501
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211092187|gb|FL375383.1|FL375383
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|149106401|gb|EE292127.2|EE292127
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211515016|gb|FL344872.1|FL344872
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211420086|gb|FL350025.1|FL350025
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211445897|gb|FL403744.1|FL403744
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211137320|gb|FL356389.1|FL356389
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211177446|gb|FL359119.1|FL359119
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211217606|gb|FL408377.1|FL408377
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211012104|gb|FL418130.1|FL418130
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211048105|gb|FL385535.1|FL385535
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|148931122|gb|EC873792.2|EC873792
EST:     CCACCCCCTTCCAAGGGCAAAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GGTACTGGATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|18660519|gb|BM500904.1|BM500904
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAA
EST: gi|211114429|gb|FL039510.1|FL039510
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211079915|gb|FL412204.1|FL412204
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211220603|gb|FL338340.1|FL338340
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|67021929|gb|CO450678.1|CO450678
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211111130|gb|FL394545.1|FL394545
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211114427|gb|FL039508.1|FL039508
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211317021|gb|FL376013.1|FL376013
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211009326|gb|FL418558.1|FL418558
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211260711|gb|FL355112.1|FL355112
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211058754|gb|FL342287.1|FL342287
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211030301|gb|FL309717.1|FL309717
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211030302|gb|FL309718.1|FL309718
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211394811|gb|FL369335.1|FL369335
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211443060|gb|FL370676.1|FL370676
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|31356531|gb|CD440888.1|CD440888
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211491900|gb|FL325739.1|FL325739
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|31354050|gb|CD438407.1|CD438407
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|213173746|gb|FM188063.1|FM188063
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211445226|gb|FL373040.1|FL373040
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211114426|gb|FL039507.1|FL039507
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211419246|gb|FL320476.1|FL320476
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211383896|gb|FL356595.1|FL356595
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211477070|gb|FL423432.1|FL423432
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|31351485|gb|CD435842.1|CD435842
EST:     CGGTACCTCC-GCCTTCAGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTACTCTGCAGAACTTTGTCCAGTCAAC
genomic: CGGTACCTCCGGCC-TCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTA-TCTGCAGAACTTTGTCCAGTCAAC
EST: gi|211121113|gb|FL321102.1|FL321102
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCANCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211134618|gb|FL369500.1|FL369500
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|149060809|gb|EE157261.2|EE157261
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211200656|gb|FL341863.1|FL341863
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|149083128|gb|EE172391.2|EE172391
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211477530|gb|FL326610.1|FL326610
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA
EST: gi|211462418|gb|FL327911.1|FL327911
EST:     CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTTCAGTCAACA
genomic: CCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcc ... atattgccagGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGCGGCGCAAGCGCAACCATGGGGCTCTTCACCGTGACGAAGAAGGCCACCACCCCCTTCGAAGGCCAGAAGCCCGGTACCTCCGGCCTCCGCAAGAAGgttcccttcccgacttttccttatctatcccccgatctccgggccccagtccggatctctctgtttctgcgacgcggcgggttcgtgctcgattctggtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccagtcc