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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGAGGCTGCTGCCTTTTGGGCTGGGAAGCTCGCCGGCGCTGTGCCATGGAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgctcggtctttacttcggcacttagatttacaatgtttcgactttcgaggaacattcctttatgaaggaggcggaagggcattggttccgaa...

Basic information

species Zea mays
transcript GRMZM2G022876_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022876_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g34950.2 (Oryza sativa), 5'ss of exon 1
AGGGAGGCTGCTGCCTTTTGGGCTGGGAAGCTCGCCGGCGCTGTGCCATGGAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgctcggtcttta-cttcggcacttagatttacaatgtttcgactttcgaggaacattcctttatgaaggaggcggaagggcattggttccgaa
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AGGGTTGCTGCTGCTTCTTGGGCCGGTGACCTCGGAAGAGCGGTGCCATGGAAGGCCGCGGTCTCCAGCGCGCTTGCCGTCGCCTTGTCCTTCACTTGCTgtaagttt-cttggccttcgtctttgtttcgcaggaactgaagggaactgcatctaaaaaataaaaataaaataagaataaaactgtacggcttgttcgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211533933|gb|FL079631.1|FL079631
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211533938|gb|FL079636.1|FL079636
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211533932|gb|FL079630.1|FL079630
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211536947|gb|FL079648.1|FL079648
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211539949|gb|FL079654.1|FL079654
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211533925|gb|FL079623.1|FL079623
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211539956|gb|FL079661.1|FL079661
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211536940|gb|FL079641.1|FL079641
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|13125853|gb|BG316423.1|BG316423
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211539950|gb|FL079655.1|FL079655
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211533939|gb|FL079637.1|FL079637
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211533934|gb|FL079632.1|FL079632
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211530935|gb|FL079622.1|FL079622
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTWAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211536951|gb|FL079652.1|FL079652
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211246142|gb|FL441753.1|FL441753
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211536937|gb|FL079638.1|FL079638
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211536944|gb|FL079645.1|FL079645
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211539948|gb|FL079653.1|FL079653
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
EST: gi|211536943|gb|FL079644.1|FL079644
EST:     GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCC                         TTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC
genomic: GAAGGCCGCGGTCTCCGGCGTGGTCGCCCTCGCCGTCTCCTTCACCTGCCgtaagcttgc ... gtacttgcagTTGTTGGTTTGGCCAATGCCAGAACTGGGGTAAACAAACCAGAATTGCTTC