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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGTGCGCTCGTCGACTCCACTCAGCTCTCTCGCTCACTCTCCTCCCCCAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgcacgggtttcctattccccgccgccgcggcctctcgctcccctctctctgcgcggcctgctgactcccgtctccgcgttcgttctcccag

Basic information

species Zea mays
transcript GRMZM2G022777_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211305003|gb|FL154238.1|FL154238
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|211305002|gb|FL154237.1|FL154237
EST:     CAAGGCCCCAGAGACAGGCAGCCGGCGAGGCCCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGGGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|76281419|gb|DV020987.1|DV020987
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|91876817|gb|EB406774.1|EB406774
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|78106806|gb|DV525224.1|DV525224
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|149035101|gb|EE155087.2|EE155087
EST:     GGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: GGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|30307202|gb|CD001875.1|CD001875
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|211165539|gb|FL456882.1|FL456882
EST:     CGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGGGGCAAGAAGGAACCCGAG
genomic: CGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|211307019|gb|FL154241.1|FL154241
EST:     AAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAAGTG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGA
genomic: AAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAA-TGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGA
EST: gi|211305004|gb|FL154239.1|FL154239
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|78121929|gb|DV540313.1|DV540313
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|110487038|gb|EE012240.1|EE012240
EST:     GCGAAGCAATG                         GATTTCAAGGGGGTCTCGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGA
genomic: GCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCT-GGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGA
EST: gi|148963213|gb|EE014191.2|EE014191
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|71297616|gb|DR784759.1|DR784759
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|211307018|gb|FL154240.1|FL154240
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGTGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|78109695|gb|DV528111.1|DV528111
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|76280583|gb|DV020151.1|DV020151
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|149080059|gb|EE169077.2|EE169077
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|67021064|gb|CO449813.1|CO449813
EST:     CAA-GTCCCAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGGGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|148963079|gb|EE014036.2|EE014036
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|211307022|gb|FL154244.1|FL154244
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|8367772|gb|BE050717.1|BE050717
EST:     GGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: GGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|149106054|gb|EE291707.2|EE291707
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|76933170|gb|DV173349.1|DV173349
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|211305000|gb|FL154235.1|FL154235
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|148933119|gb|EC876754.2|EC876754
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|148995361|gb|EE034575.2|EE034575
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
EST: gi|31355560|gb|CD439917.1|CD439917
EST:     CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAATCAATG                         GATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG
genomic: CAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgca ... gttctcccagGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGTGGCAAGAAGGAACCCGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAGTGCGCTCGTCGACTCCACTCAGCTCTCTCGCTCACTCTCCTCCCCCAAGGTCCTAGAGACAGGCAGCCGGCGAGGCGCGCCGCCGCGAAGCAATGgcaagttgcacgggtttcctattccccgccgccgcggcctctcgctcccctctctctgcgcggcctgctgactcccgtctccgcgttcgttctcccag

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