1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCTTCTGGTACGACATCCAGACGAAGACCAAGTCCGGGGCTGCGTGGGGCACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggcgatgcgccggataccttcatggcccggttccctttcctgatcactcccgttctgatctggtctggatgccgtggtggtttctgggtagtg...
species | Zea mays |
transcript | GRMZM2G022019_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAGTGCTGATTTEST: gi|211323606|gb|FL396586.1|FL396586
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|211254448|gb|FL405697.1|FL405697
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAGTGCTGATTTEST: gi|26558254|gb|CA830489.1|CA830489
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|211536036|gb|FL385929.1|FL385929
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAGTGCTGATTTEST: gi|211533212|gb|FL395811.1|FL395811
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: A-CTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|50336177|gb|CO531303.1|CO531303
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|21987193|gb|BQ778721.1|BQ778721
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|211515995|gb|FL388516.1|FL388516
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|211311470|gb|FL411468.1|FL411468
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAGTGCTGATTTEST: gi|211077767|gb|FL430526.1|FL430526
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: AC-TCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAGTGCTGATTTEST: gi|211368575|gb|FL387082.1|FL387082
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAGTGCCTGATTEST: gi|211151625|gb|FL390476.1|FL390476
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGC-TGATT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAGTGCTGATTTEST: gi|211027895|gb|FL424771.1|FL424771
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAGTGCTGATTTEST: gi|78026174|gb|DV494561.1|DV494561
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: CCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|211115395|gb|FL414256.1|FL414256
genomic: CCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAGTGCTGATTTEST: gi|71437159|gb|DR818209.1|DR818209
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|211413496|gb|FL407162.1|FL407162
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAGTGCTGATTTEST: gi|211254363|gb|FL402651.1|FL402651
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTSCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTEST: gi|50322672|gb|CO517798.1|CO517798
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|32164823|gb|CD670141.1|CD670141
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: GAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|71758459|gb|DR956396.1|DR956396
genomic: GAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|31558353|gb|CD527565.1|CD527565
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: CGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|211406227|gb|FL424174.1|FL424174
genomic: CGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAGTGCTGATTTEST: gi|32933632|gb|CF038444.1|CF038444
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|211478942|gb|FL383623.1|FL383623
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAGTGCTGATTTEST: gi|16925812|gb|BM078880.1|BM078880
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACATCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|22935572|gb|BU571847.1|BU571847
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|91049925|gb|EB160343.1|EB160343
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTTEST: gi|211020161|gb|FL408602.1|FL408602
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
EST: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAG CATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAGTGCTGATTT
genomic: ACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggc ... tctgttgtagCATGTATGATCAGATTTTTCGTCCAAGCAAGTTGTCTGGGAATGCTGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTCTGGTACGACATCCAGACGAAGACCAAGTCCGGGGCTGCGTGGGGCACCTCCCTCAAAAAGGCCTACACCTTCGACACCGTTGAGGAGTTCTGGAGgtacgttggcgatgcgccggataccttcatggcccggttccctttcctgatcactcccgttctgatctggtctggatgccgtggtggtttctgggtagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG