Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCTCCTCCCAGTCGCCATGGTCAGGCTCACCGCTGACCTGATATGGAAGAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccactcccttccttcctccacctgttagatctagggttatgtgttattctcttcgaaagctcacggcccttgctcttcctcctcctccaacttcgctgcag

Basic information

species Zea mays
transcript GRMZM2G021742_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G021742_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g13990.3 (Oryza sativa), 5'ss of exon 1
CGCCTCCTCCCAGTCGCCATGGTCAGGCTCACCGCTGACCTGATATGGAAGAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccactcccttccttcctccacctgttagatctagggttatgtgttattctcttcgaaagctcacggcccttgctcttcctcctcctccaacttcgctgcag-------------------
||||  | |     ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | |||  ||||| |||   |  | |||||||||||||  ||||| ||  |         |||   ||   |    ||    |  |  || ||  |||  |                   
CGCCCTCCCGGCCGCGCCATGGTGAGGCTCACCGCCGACCTGATATGGAAGAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgctct-ttcctccct--gctcgctagatctagggtttagtgttcttggccctcttttttcattccctccg----tctcggtagtttaatttgtctgttgtgtttcttttccttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211426971|gb|FK970232.1|FK970232
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211426968|gb|FK970229.1|FK970229
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGA-STCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211429560|gb|FK970248.1|FK970248
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211424364|gb|FK970219.1|FK970219
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211429551|gb|FK970239.1|FK970239
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211437351|gb|FK970281.1|FK970281
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|60343545|gb|DN210518.1|DN210518
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211429559|gb|FK970247.1|FK970247
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGA-STCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211432149|gb|FK970251.1|FK970251
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211426972|gb|FK970233.1|FK970233
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211426960|gb|FK970221.1|FK970221
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211426962|gb|FK970223.1|FK970223
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211424362|gb|FK970217.1|FK970217
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|5268366|gb|AI770330.1|AI770330
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAAATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211429561|gb|FK970249.1|FK970249
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211434758|gb|FK970271.1|FK970271
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGA-STCGACCTCCGAG                         GACAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagG-CAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211432156|gb|FK970258.1|FK970258
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|76918345|gb|DV167252.1|DV167252
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211434764|gb|FK970277.1|FK970277
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|31364592|gb|CD448947.1|CD448947
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAAATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211434752|gb|FK970265.1|FK970265
EST:     AGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGA-STCGNACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: AGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCG-ACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211429555|gb|FK970243.1|FK970243
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGA-STCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211434763|gb|FK970276.1|FK970276
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211424363|gb|FK970218.1|FK970218
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211434762|gb|FK970275.1|FK970275
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211429550|gb|FK970238.1|FK970238
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGA-STCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211426965|gb|FK970226.1|FK970226
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGA-STCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211434757|gb|FK970270.1|FK970270
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211432160|gb|FK970262.1|FK970262
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211424361|gb|FK970216.1|FK970216
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGA-STCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|71761635|gb|DR959572.1|DR959572
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211432159|gb|FK970261.1|FK970261
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211429557|gb|FK970245.1|FK970245
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAT                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211429553|gb|FK970241.1|FK970241
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211426959|gb|FK970220.1|FK970220
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211432151|gb|FK970253.1|FK970253
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211432161|gb|FK970263.1|FK970263
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211432154|gb|FK970256.1|FK970256
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211429552|gb|FK970240.1|FK970240
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211434766|gb|FK970279.1|FK970279
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211432155|gb|FK970257.1|FK970257
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211426964|gb|FK970225.1|FK970225
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211432158|gb|FK970260.1|FK970260
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211429558|gb|FK970246.1|FK970246
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211434759|gb|FK970272.1|FK970272
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGANCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211432162|gb|FK970264.1|FK970264
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211434765|gb|FK970278.1|FK970278
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGA-STCGACCTMMGAG                         GCAACAAGATMGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211429556|gb|FK970244.1|FK970244
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211424360|gb|FK970215.1|FK970215
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGASSTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211434754|gb|FK970267.1|FK970267
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211426961|gb|FK970222.1|FK970222
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211434761|gb|FK970274.1|FK970274
EST:     AGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGA-NTCGAACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: AGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCG-ACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211429547|gb|FK970235.1|FK970235
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211432157|gb|FK970259.1|FK970259
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211426969|gb|FK970230.1|FK970230
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211434760|gb|FK970273.1|FK970273
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
EST: gi|211432153|gb|FK970255.1|FK970255
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAG                         GCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccac ... ttcgctgcagGCAACAAGATCGCCGTCATCGAGAATGTCGGAGCCACCGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCTCCTCCCAGTCGCCATGGTCAGGCTCACCGCTGACCTGATATGGAAGAGCCCGCACTTCTTCAACGCCGTCAAGGAGCGCGAGCTCGACCTCCGAGgtttgcccactcccttccttcctccacctgttagatctagggttatgtgttattctcttcgaaagctcacggcccttgctcttcctcctcctccaacttcgctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG