1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGGACACGCGCCCGCCTCTGCCAAGAATTTCGCCTTCTCCGGCGCCGATCCCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACGgtgcgcaccgccgctgttctcgcctcttgctgtctttgcgtgtcgtttggttgcggttttcctagttcctttctcgtgccaagagcccaagagtcaagtc...
species | Zea mays |
transcript | GRMZM2G021378_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACG GATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATCEST: gi|40286967|gb|CK327359.1|CK327359
genomic: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACGgtgcgcaccg ... gatttaatagGATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATC
EST: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACG GATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATCEST: gi|76928325|gb|DV171578.1|DV171578
genomic: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACGgtgcgcaccg ... gatttaatagGATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATC
EST: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACG GATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATCEST: gi|38568867|gb|CF974752.1|CF974752
genomic: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACGgtgcgcaccg ... gatttaatagGATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATC
EST: CCGCCCATCCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACG GATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATCEST: gi|76289342|gb|DV028910.1|DV028910
genomic: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACGgtgcgcaccg ... gatttaatagGATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATC
EST: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACG GATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATCEST: gi|91047987|gb|EB158405.1|EB158405
genomic: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACGgtgcgcaccg ... gatttaatagGATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATC
EST: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACG GATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATCEST: gi|71320028|gb|DR796779.1|DR796779
genomic: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACGgtgcgcaccg ... gatttaatagGATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATC
EST: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACG GATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATCEST: gi|78109317|gb|DV527733.1|DV527733
genomic: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACGgtgcgcaccg ... gatttaatagGATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATC
EST: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACG GATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATCEST: gi|24462631|gb|BM660162.1|BM660162
genomic: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACGgtgcgcaccg ... gatttaatagGATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATC
EST: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACG GATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGACATGTCGACATC
genomic: CCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACGgtgcgcaccg ... gatttaatagGATTCGTTTGAGCTCGGCAAACGGGGGCAGTCCTCAGGAAATGTCGACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGACACGCGCCCGCCTCTGCCAAGAATTTCGCCTTCTCCGGCGCCGATCCCGCCCATTCTTGTGCCGCCGGCAGGCCAAGGATGCGGAACCTTCTCACGgtgcgcaccgccgctgttctcgcctcttgctgtctttgcgtgtcgtttggttgcggttttcctagttcctttctcgtgccaagagcccaagagtcaagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
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