Sequence
atgc intronic sequence ATGC exonic sequenceCGGCGGGAGGAACGGATACGGCGCCAAACTCACTAACATCTTCTCCACTGAGTTCGTCATCGAGACCGCCGATGGGCGTCGCCAGAAGAAGTACAAGCAGgtgacaagttttggctgtctcttgggcgctcttcaaatgggcgttttacccttttggtttgttatatttcctgtgtggatgtgtattgaaatggggtaga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G021270_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA10G11610.1 (Glycine max), 5'ss of exon 1
CGGCGGGAGGAACGGATACGGCGCCAAACTCACTAACATCTTCTCCACTGAGTTCGTCATCGAGACCGCCGATGGGCGTCGCCAGAAGAAGTACAAGCAGgtgacaagttttggc---------tgtctcttgggcgctcttcaaa-tgggcgttttacccttttggtttgttatatttcctgtgtggatgtgtattgaaatggggtaga
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CGGGGGACGCAACGGCTATGGCGCCAAGCTCACCAACATCTTCTCGACTGAGTTCGTCATCGAAACTGCCGATGGAAAGCGCCAGAAGAAGTATAAACAGgtcgtcattttcgccctcaaagtttgtctcttcgtttttgtggggagtgctagggtctaatttttaattcgcaacacttctgaggtttttgaacccccaa----------
upper sequence: GRMZM2G021270_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA15G43170.1 (Glycine max), 5'ss of exon 1
CGGCGGGAGGAACGGATACGGCGCCAAACTCACTAACATCTTCTCCACTGAGTTCGTCATCGAGACCGCCGATGGGCGTCGCCAGAAGAAGTACAAGCAGgtgacaagttt-----tggctgtct-cttgggcgctc---ttcaaatgggc-gttttaccctttt-ggtttgttatatttcctgtgtggatgtgtattgaaatggggtaga
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CGGCGGACGCAACGGTTATGGTGCCAAGCTCACTAACATCTTCTCCACGGAGTTTGTCATCGAAACCGCCGATGGAAAGCGTCAGAAGAAGTATAAACAGgtcttcattttctccctgaaagtttgtttgtgtcttcgggtttaattgaacagttctagggttttcaagtcctcatttaattggagtatttctcaattga-----------
upper sequence: GRMZM2G021270_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 1
CGGCGGGAGGAACGGATACGGCGCCAAACTCACTAACATCTTCTCCACTGAGTTCGTCATCGAGACCGCCGATGGGCGTCGCCAGAAGAAGTACAAGCAGgtgacaag---ttttggctgtctcttgggcgctcttcaaatgggcgttttacccttttggtttgttatatttcctgtgtggatgtgtattgaaatggggtaga
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CGGTGGGAGGAATGGGTACGGGGCGAAGCTCACGAATATTTTTTCAACGGAGTTTGTGATCGAGACCGCAGATGGGAGGCGCCAGAAGAAGTATAAGCAGgtataaaagtatttgggcttaggattagggtttctttattttcttttggttcttgaatgaggagttcttttttcgggttttacattt-ttgaactgtaatt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|93284597|gb|EB676861.1|EB676861EST: AGTTCGTCATCGAGACCGCCGATGGGCGTCGCCAGAAGAAGTACAAGCAG GTTTTCTATGAGAACATGGGGAAGAAGTCAGAGCCCCAGATTACCAAGTGC
genomic: AGTTCGTCATCGAGACCGCCGATGGGCGTCGCCAGAAGAAGTACAAGCAGgtgacaagtt ... tcaaatccagGTTTTCTATGAGAACATGGGGAAGAAGTCAGAGCCCCAGATTACCAAGTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGGCGGGAGGAACGGATACGGCGCCAAACTCACTAACATCTTCTCCACTGAGTTCGTCATCGAGACCGCCGATGGGCGTCGCCAGAAGAAGTACAAGCAGgtgacaagttttggctgtctcttgggcgctcttcaaatgggcgttttacccttttggtttgttatatttcctgtgtggatgtgtattgaaatggggtaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT