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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCCTTGTCGAACAGCTATGGGGGGTAGTTTCCCACTTAATGGCACCTACTTTCAAGTCAATGAGgtaaacatagtgatgtctaatgtcttactcctagtactgctcctaagcctcttgtctcaatggacacactttttgtgactctatctatccatacag

Basic information

species Zea mays
transcript GRMZM2G020977_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020977_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g37350.1 (Oryza sativa), 5'ss of exon 17
GGTTCCTTGTCGAACAGCTATGGGGGGTAGTTTCCCACTTAATGGCACCTACTTTCAAGTCAATGAGgtaaacatagtgatgtctaatgtcttactcctagtactgc------tcctaagcctcttgtctcaatggacacactttttgtgactct--atctatccatacag
 |||||||| |||||||| ||| | |||||||| |||||||||||||| ||||||||||| |||||||||  |  ||| || |||       ||    ||| |  |       |    | ||    | ||  || ||      |||      |||  || | |   | |||
-GTTCCTTGCCGAACAGCCATGAGAGGTAGTTTTCCACTTAATGGCACTTACTTTCAAGTTAATGAGgtatgctgagttatatctgtcaaagtatgagtaggatagtggagagttgctatccatgggcctttatagagttgactttacgatttctggatttgtttttgcag

upper sequence: GRMZM2G020977_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g37410.1 (Oryza sativa), 5'ss of exon 18
GGTTCCTTGTCGAACAGCTATGGGGGGTAGTTTCCCACTTAATGGCACCTACTTTCAAGTCAATGAGgtaaacatagtgatgtctaatgtcttactcctagtactgc------tcctaagcctcttgtctcaatggacacactttttgtgactct---atctatccatacag
 |||||||| |||||||| ||| | |||||||| |||||||||||||| ||||||||||| |||||||||  |  ||| || |||       ||    ||| |  |       |    | ||    | ||  || ||       |||  || |     || | |   | |||
-GTTCCTTGCCGAACAGCCATGAGAGGTAGTTTTCCACTTAATGGCACTTACTTTCAAGTTAATGAGgtatgctgagttatatctgtcaaagtatgagtaggatagtggagagttgctatccatgggcctttatagagttggactttacgatttctggatttgtttttgcag