1 5' 3' |
AGAGAAACTGGACAGGAGCGCGGGCTTCGGACTCCCATCTCCGCGGGGGCACAAAAGATGCAGGTCCTCATGACTCCCAGCCTCCGCGCAGCGCAATCGGgtgagatttctgctgcgccacatctcccctccggttctgttttccctggttcctgattcggctgccttccgttatttatatataaataaatgtgcttcgg...
species | Zea mays |
transcript | GRMZM2G020938_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAAAAGATGCAGGTCCTCATGACTCCCAGCCTCCGCGCAGCGCAATCGG ATTCTACATAGCAGAAGTCCTCCTGGCGCTAGAATACCTGCACATGCTCGGEST: gi|28930937|gb|CB334298.1|CB334298
genomic: ACAAAAGATGCAGGTCCTCATGACTCCCAGCCTCCGCGCAGCGCAATCGGgtgagatttc ... cttgctgcagATTCTACATAGCAGAAGTCCTCCTGGCGCTAGAATACCTGCACATGCTCGG
EST: ACAAAAGATGCAGGTCCTCATGACTCCCAGCCTCCGCGCAGCGCAATCGG ATTCTACATAGCAGAAGTCCTCCTGGCGCTAGAATACCTGCACATGCTCGG
genomic: ACAAAAGATGCAGGTCCTCATGACTCCCAGCCTCCGCGCAGCGCAATCGGgtgagatttc ... cttgctgcagATTCTACATAGCAGAAGTCCTCCTGGCGCTAGAATACCTGCACATGCTCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGAAACTGGACAGGAGCGCGGGCTTCGGACTCCCATCTCCGCGGGGGCACAAAAGATGCAGGTCCTCATGACTCCCAGCCTCCGCGCAGCGCAATCGGgtgagatttctgctgcgccacatctcccctccggttctgttttccctggttcctgattcggctgccttccgttatttatatataaataaatgtgcttcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc