1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGATTTGTGGCCGTCCCACCTCGAGGCCTCTGAGTCTGACCGCCTCCCCCGCCTCCTCGCCGCCGCCATCAAGGCCCGAAAGCCCAATCTGAAGAAGACCgtgagcatccatatgcttccctcctgttttttatgcggctcggaaattagttggttcggtaccgcgatgttttttttgggtacgcttctggtttagtttt...
species | Zea mays |
transcript | GRMZM2G020775_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCTCCTCGCCGCCGCCATCAAGGCCCGAAAGCCCAATCTGAAGAAGACC ATCAAATTGACCATCTGTGAAGGAGAAGATGGCACTGAATCATCAAATGGAEST: gi|19057851|gb|BM736518.1|BM736518
genomic: GCCTCCTCGCCGCCGCCATCAAGGCCCGAAAGCCCAATCTGAAGAAGACCgtgagcatcc ... catgtcacagATCAAATTGACCATCTGTGAAGGAGAAGATGGCACTGAATCATCAAATGGA
EST: GCCTCCTCGCCGCCGCCATCAAGGCCCGAAAGCCCAATCTGAAGAAGACC ATCAAATTGACCATCTGTGAAGGAGAAGATGGCACTGAATCATCAAATGGAEST: gi|211066678|gb|FL084208.1|FL084208
genomic: GCCTCCTCGCCGCCGCCATCAAGGCCCGAAAGCCCAATCTGAAGAAGACCgtgagcatcc ... catgtcacagATCAAATTGACCATCTGTGAAGGAGAAGATGGCACTGAATCATCAAATGGA
EST: GCCTCCTCGCCGCCGCCATCAAGGCCCGAAAGCCCAATCTGAAGAAGACC ATCAAATTGACCATCTGTGAAGGAGAAGATGGCACTGAATCATCAAATGGAEST: gi|211066679|gb|FL084209.1|FL084209
genomic: GCCTCCTCGCCGCCGCCATCAAGGCCCGAAAGCCCAATCTGAAGAAGACCgtgagcatcc ... catgtcacagATCAAATTGACCATCTGTGAAGGAGAAGATGGCACTGAATCATCAAATGGA
EST: GCCTCCTCGCCGCCGCCATCAAGGCCCGAAAGCCCAATCTGAAGAAGACC ATCAAATTGACCATCTGTGAAGGAGAAGATGGCACTGAATCATCAAATGGAEST: gi|211500207|gb|FL084206.1|FL084206
genomic: GCCTCCTCGCCGCCGCCATCAAGGCCCGAAAGCCCAATCTGAAGAAGACCgtgagcatcc ... catgtcacagATCAAATTGACCATCTGTGAAGGAGAAGATGGCACTGAATCATCAAATGGA
EST: GCCTCCTCGCCGCCGCCATCAAGGCCCGAAAGCCCAATCTGAAGAAGACC ATCAAATTGACCATCTGTGAAGGAGAAGATGGCACTGAATCATCAAATGGAEST: gi|211500206|gb|FL084205.1|FL084205
genomic: GCCTCCTCGCCGCCGCCATCAAGGCCCGAAAGCCCAATCTGAAGAAGACCgtgagcatcc ... catgtcacagATCAAATTGACCATCTGTGAAGGAGAAGATGGCACTGAATCATCAAATGGA
EST: GCCTCCTCGCCGCCGCCATCAAGGCCCGAAAGCCCAATCTGAAGAAGACC ATCAAATTGACCATCTGTGAAGGAGAAG
genomic: GCCTCCTCGCCGCCGCCATCAAGGCCCGAAAGCCCAATCTGAAGAAGACCgtgagcatcc ... catgtcacagATCAAATTGACCATCTGTGAAGGAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTTGTGGCCGTCCCACCTCGAGGCCTCTGAGTCTGACCGCCTCCCCCGCCTCCTCGCCGCCGCCATCAAGGCCCGAAAGCCCAATCTGAAGAAGACCgtgagcatccatatgcttccctcctgttttttatgcggctcggaaattagttggttcggtaccgcgatgttttttttgggtacgcttctggtttagtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccctcct