1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGGCGGCCGGCGACCTGTCCGACGATGAGAAGCGGGCGATGAGGGGCAGCAAGTTCGCGCCGCTTCCTCCGCCTCCTCCCTCTTCCCGCCCCCAGCCGAGgtaccgcgcggcccccttctctgaagcctgagtccagatctaccgataacagattcagcgcgtgttgtgttgttacggttgcgggtggcaactagcttcg...
species | Zea mays |
transcript | GRMZM2G020606_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGTTCGCGCCGCTTCCTCCGCCTCCTCCCTCTTCCCGCCCCCAGCCGAG GATGGCCCATCCTGGAGGAGCACTAACCACAAACAAGGCTGCTGCTTTAGCEST: gi|37376807|gb|CF624961.1|CF624961
genomic: AAGTTCGCGCCGCTTCCTCCGCCTCCTCCCTCTTCCCGCCCCCAGCCGAGgtaccgcgcg ... tatcaaatagGATGGCCCATCCTGGAGGAGCACTAACCACAAACAAGGCTGCTGCTTTAGC
EST: AAGTTCGCGCTGTTTCTTCCGCCTCCTCCCTTTTCCCGCCCCCAGCCGAG GATGGCCCATCCTGGAGGAGCACTAACCACAAACAAGGCTGCTGCTTTAGCEST: gi|211299732|gb|FL213380.1|FL213380
genomic: AAGTTCGCGCCGCTTCCTCCGCCTCCTCCCTCTTCCCGCCCCCAGCCGAGgtaccgcgcg ... tatcaaatagGATGGCCCATCCTGGAGGAGCACTAACCACAAACAAGGCTGCTGCTTTAGC
EST: AAGTTCGCGCCGCTTCCTCCGCCTCCTCCCTCTTCCCGACCCGAGCCGAG GATGGCCCATCCTGGAGGAGCACTAACCACAAACAAGGCTGCTGCTCTAGCEST: gi|28187621|gb|CB179231.1|CB179231
genomic: AAGTTCGCGCCGCTTCCTCCGCCTCCTCCCTCTTCCCGCCCCCAGCCGAGgtaccgcgcg ... tatcaaatagGATGGCCCATCCTGGAGGAGCACTAACCACAAACAAGGCTGCTGCTTTAGC
EST: AAGTTCGCGCCGCTTCCTCCGCCTCCTCCCTCTTCCCGCCCCCAGCCGAG GATGGCCCATCCTGGAGGAGCACTAACCACAAACAAGGCTGCTGCTTTAGCEST: gi|161591214|gb|EY959425.1|EY959425
genomic: AAGTTCGCGCCGCTTCCTCCGCCTCCTCCCTCTTCCCGCCCCCAGCCGAGgtaccgcgcg ... tatcaaatagGATGGCCCATCCTGGAGGAGCACTAACCACAAACAAGGCTGCTGCTTTAGC
EST: AAGTTCGCGCCGCTTCCTCCGCCTCCTCCCTCTTCCCGCCCC-AGCCGAG GATGGCCCATCC
genomic: AAGTTCGCGCCGCTTCCTCCGCCTCCTCCCTCTTCCCGCCCCCAGCCGAGgtaccgcgcg ... tatcaaatagGATGGCCCATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGGCCGGCGACCTGTCCGACGATGAGAAGCGGGCGATGAGGGGCAGCAAGTTCGCGCCGCTTCCTCCGCCTCCTCCCTCTTCCCGCCCCCAGCCGAGgtaccgcgcggcccccttctctgaagcctgagtccagatctaccgataacagattcagcgcgtgttgtgttgttacggttgcgggtggcaactagcttcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cggcccc