1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCCCCGTGCTACGCGTCCTGCGTGAGCTTGGCTGCGGCGCCGTCCTCGTCAGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttcttgttccaatttttttttcctgggatggaccggtgtcattgagcaaatgtgtctgcacttgccggtggaagaatacttttctgctgttgtt...
species | Zea mays |
transcript | GRMZM2G020446_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAAEST: gi|211008647|gb|FL282362.1|FL282362
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAA
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGGAAATGGGAAGACACTCGAAGATCCTTAA-TTAGCTEST: gi|211005873|gb|FL282350.1|FL282350
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGG-AAATGGGAAGACACTCGAACATC-TTAAATTAGCT
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGCATATTTAACGGAAATGGGAAGACACTCGGACATCTTAAATTAGCTGCEST: gi|148934359|gb|EC878388.2|EC878388
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGCEST: gi|211003081|gb|FL282330.1|FL282330
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTAGCTGCEST: gi|211008652|gb|FL282367.1|FL282367
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: CGGCAACGAGCTCCGACTCGNCCCTC-AGGCGGGATTTCGACCC-GCCAG GTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAEST: gi|211008642|gb|FL282357.1|FL282357
genomic: CGGCAACGAGCTCCGACTCG-CCCTCCAGGCGGGATT-CGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTA
EST: AGCGGAAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GGGCATATTTAACGGAAATGGGGAAAACACTCGAACATCTTAAATTAACTGEST: gi|211011420|gb|FL282372.1|FL282372
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGG-AAGACACTCGAACATCTTAAATTAGCTG
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTAGCTGCEST: gi|76928257|gb|DV171542.1|DV171542
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGCEST: gi|211003080|gb|FL282329.1|FL282329
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: GCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCCGC-AG GTGTATATTTAAEST: gi|211003087|gb|FL282336.1|FL282336
genomic: GCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCC-GCCAGgtgcggttct ... tgaagatcagGTGCATATTTAA
EST: GCGGCTACGAGCTCCGACTCCCCCTTCCAG-CGGGATTCGACCCCGCC-G GTGGCATATT-AACGGGAAATGGGAAGACACTCEST: gi|211005870|gb|FL282347.1|FL282347
genomic: GCGGCAACGAGCTCCGACTCGCCCT-CCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTG-CATATTTAACGG-AAATGGGAAGACACTC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGCATATTTTACGGANATGGGAAGACACTCGAACATCTTAAATTAGCTGCEST: gi|211008641|gb|FL282356.1|FL282356
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGTCAG GTGTATATTTAACGGAAATGGCGA-GACACTCGAAEST: gi|211008644|gb|FL282359.1|FL282359
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGG-GAAGACACTCGAA
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTANATTAGCTGCEST: gi|22545814|gb|BU098188.1|BU098188
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GGGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTAGCTGCEST: gi|211008645|gb|FL282360.1|FL282360
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGCATATTTAACGGAAATGGGAAGACACTCGAACATCT-AAATTAGCTGCEST: gi|50329919|gb|CO525045.1|CO525045
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGCEST: gi|211003079|gb|FL282328.1|FL282328
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGCEST: gi|211003083|gb|FL282332.1|FL282332
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: GCGGCAACGAGCTCCGACTCGCC-TCCCAGGCGGGATTCGACCCCGCCAG GGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAEST: gi|211005867|gb|FL282344.1|FL282344
genomic: GCGGCAACGAGCTCCGACTCGCCCTCC-AGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagG-TGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTA
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTEST: gi|9825116|gb|BE575318.1|BE575318
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATT
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTAGCTGCEST: gi|26457088|gb|CA828671.1|CA828671
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGCATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTAGCTGCEST: gi|20811294|gb|BQ295772.1|BQ295772
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTAGCTGCEST: gi|211376700|gb|FL282323.1|FL282323
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGCATATTTAACGGAAATGGGGAGACACTCGAACATCTTAAATTAGCTGCEST: gi|211003085|gb|FL282334.1|FL282334
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTAEST: gi|211003086|gb|FL282335.1|FL282335
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACATCTTAAATTA
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGCATATTTAACGGAAATGGGAAGACACTCGAACATEST: gi|211008640|gb|FL282355.1|FL282355
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTCGAACAT
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGCATATTTAACGGAAATGGGAAGACACTC
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttct ... tgaagatcagGTGCATATTTAACGGAAATGGGAAGACACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCCGTGCTACGCGTCCTGCGTGAGCTTGGCTGCGGCGCCGTCCTCGTCAGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggttcttgttccaatttttttttcctgggatggaccggtgtcattgagcaaatgtgtctgcacttgccggtggaagaatacttttctgctgttgtt
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