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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGACACAGGCGCTGGCGCCCTCCCTCCGCCTCCTCCTGCTGCTACCGCTGCTCGCCGCCGCCGCCGCCGCCGCCGCGTTGTCTCACCCAGCGCACGAGgtgggtgtgctttgattctgttctgtcgtcgcatgctttgtctgctctggctgctcgcctcgcctgacgtggctggattcggctgcgcgcgtggcag

Basic information

species Zea mays
transcript GRMZM2G020002_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149082368|gb|EE171552.2|EE171552
EST:     CGCCGCCGCCGCGTTGTCTCACCCAGCGCACGAG                         TTCTGCGCGGTCGGGGGTGACGCCTCCGGCTGCGGCGGCGGAGGAGACGGC
genomic: CGCCGCCGCCGCGTTGTCTCACCCAGCGCACGAGgtgggtgtgc ... cgcgtggcagTTCTGCGCGGTCGGGGGTGACGCCTCCGGCTGCGGCGGCGGAGGAGACGGC
EST: gi|87152398|gb|DY397187.1|DY397187
EST:     GTCTCACCCAGCGCACGAG                         TTCTGCGCGGTCGGGGGTGACGCCTCCGGCTGCGGCGGCGGAGGAGACGGC
genomic: GTCTCACCCAGCGCACGAGgtgggtgtgc ... cgcgtggcagTTCTGCGCGGTCGGGGGTGACGCCTCCGGCTGCGGCGGCGGAGGAGACGGC