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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCCGGCTAAGTACTTCACCGACGCAGCGCCGATCGGGAACGGCCGCCTAGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccaccgctttggttctctgtagttgacttctttgctctctatttagccgtggatcagttaatttggagcgaaaaggacttcttaattataactca...

Basic information

species Zea mays
transcript GRMZM2G019673_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211217978|gb|FL307288.1|FL307288
EST:     AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACC                         ATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
genomic: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccacc ... gttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
EST: gi|211263163|gb|FL355594.1|FL355594
EST:     AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACC                         ATGACACTCTATGGACAGGTGGACCTGGTAATTATAYAAATCYYAMTGCAC
genomic: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccacc ... gttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
EST: gi|50326552|gb|CO521678.1|CO521678
EST:     AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACC                         ATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
genomic: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccacc ... gttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
EST: gi|211475945|gb|FL359361.1|FL359361
EST:     AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGARGCTCCAGCTTAACC                         ATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
genomic: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccacc ... gttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
EST: gi|211422894|gb|FL357529.1|FL357529
EST:     AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACC                         ATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
genomic: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccacc ... gttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
EST: gi|211162551|gb|FL361306.1|FL361306
EST:     AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACC                         ATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
genomic: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccacc ... gttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
EST: gi|211382984|gb|FL317837.1|FL317837
EST:     AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACC                         ATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
genomic: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccacc ... gttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCCCGGCTAAGTACTTCACCGACGCAGCGCCGATCGGGAACGGCCGCCTAGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccaccgctttggttctctgtagttgacttctttgctctctatttagccgtggatcagttaatttggagcgaaaaggacttcttaattataactca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG