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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGTTACCACCTCCTCACGCTGGTATGCCACTGCCTCATCCTCACCTTGGCCATCCTGTTCCTCTGGTCTAGTGCCATGGTTTTCATCAACAAgtgagtgagtgggggtccaaacttctgcatatctgcgccttaataaggtcatatttgcgctgatactcctatagtttaacccaacttacatacatgttga...

Basic information

species Zea mays
transcript GRMZM2G019393_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019393_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g45050.2 (Oryza sativa), 5'ss of exon 2
-----ATGGGTTACCACCTCCTCACGCTGGTATGCCACTGCCTCATCCTCACCTTGGCCATCCTGTTCCTCTGGTCTAGTGCCATGGTTTTCATCAACAAgtgagtgagtgggggtccaaacttctgcatatctgcgccttaataaggtcatatttgcgctg--atactcctatagtttaaccca--acttacatacatgttga
     |||| ||| || |||||||| ||| | ||||||||  ||||||||||| ||||||| || ||||||||||| | ||||     |||||||||||||||||      |       ||||  |    ||   |  | ||  ||  | | |||  |  ||  ||  |    |  | || |     | |  | || |  || |
AAGTCATGGATTATCATCTCCTCACCCTGTTGTGCCACTGTATCATCCTCACCCTGGCCATGCTCTTCCTCTGGTCCAATGCCTCAACTTTCATCAACAAgtgagcttcctgtaacttcaactgtt----attcacaacatatcaaacttaaattgtcagtggcatgttaacttgatctagctttttattggcctatagattaa