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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGCCGAGCCGTTCGGCCGGTCCACTCCCGCGAAGCTTCCAGTAGAGGCGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagcactcgctagcaccgtcatttcactgtcccgctcgcacgctaaggttccgcatctacctacctatctctgggctccgatctgacggcgttgtcgcag

Basic information

species Zea mays
transcript GRMZM2G019260_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211063636|gb|FL185551.1|FL185551
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|78089475|gb|DV517849.1|DV517849
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|78093392|gb|DV521766.1|DV521766
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|101392374|gb|EB818116.1|EB818116
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|76285163|gb|DV024731.1|DV024731
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|211060651|gb|FL185544.1|FL185544
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGARGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|211063635|gb|FL185550.1|FL185550
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|211060654|gb|FL185547.1|FL185547
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|74234775|gb|DT642689.1|DT642689
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|211060650|gb|FL185543.1|FL185543
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|211063634|gb|FL185549.1|FL185549
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCG-CGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|71447563|gb|DR828613.1|DR828613
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|148978577|gb|EE026218.2|EE026218
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|211060652|gb|FL185545.1|FL185545
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCG-CGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|211060653|gb|FL185546.1|FL185546
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCCGC-GGGGAAAGTGCTCATCG
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGC-GCCGGGGAAGGTGCTCATCG
EST: gi|91867695|gb|EB399758.1|EB399758
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|76017987|gb|DT945157.1|DT945157
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|101390541|gb|EB817205.1|EB817205
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
EST: gi|71308540|gb|DR790509.1|DR790509
EST:     CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGT                         GGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT
genomic: CGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagca ... gttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTGCCGAGCCGTTCGGCCGGTCCACTCCCGCGAAGCTTCCAGTAGAGGCGACCTTCGGATCGAGTCTCGGCCGCCGAGGAGTCGAAGGCCATGGAAGTgtgaggagcactcgctagcaccgtcatttcactgtcccgctcgcacgctaaggttccgcatctacctacctatctctgggctccgatctgacggcgttgtcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG