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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGATGGCCTCCTACTTCGCCGGTCCGGCCATCGTGCCGTCGCAGCACGCCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAGgtctgtccgcaatcctctattcctcatgaccgatttccatctcccctcccgctgaatcctaaccccattcgcctctccgatcgcag

Basic information

species Zea mays
transcript GRMZM2G018946_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89249666|gb|DY621452.1|DY621452
EST:     CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAG                         TCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCGCCACCGTTCGTCACATC
genomic: CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAGgtctgtccgc ... ccgatcgcagTCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATC
EST: gi|78082630|gb|DV511040.1|DV511040
EST:     CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAG                         TCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATC
genomic: CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAGgtctgtccgc ... ccgatcgcagTCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATC
EST: gi|91049845|gb|EB160263.1|EB160263
EST:     CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAG                         TCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATC
genomic: CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAGgtctgtccgc ... ccgatcgcagTCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATC
EST: gi|78074317|gb|DV502751.1|DV502751
EST:     CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAG                         TCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATC
genomic: CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAGgtctgtccgc ... ccgatcgcagTCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATC