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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGTCCGCGATCTCGGCTGGCCGCCTGGGCTTGGCCCTCGCCACCGCTCCCGTCTCCGGTTCCGGCGGCCGAGCCAGGTGAACGATCTCTCCAGTCCGgtccccccctggcccctaccccaaccctaccggctggttcgtcgcgcgcgccgaatcgtggagaggcgggaatctgacgcggacctcattggattccgtgcaggtttgctcgggtcttcgtgccag

Basic information

species Zea mays
transcript GRMZM2G018837_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76937510|gb|DV175167.1|DV175167
EST:     CTCCGGTTCCGGCGGCCGAGCCAGGTTTGCTCGGGTCT-T-C-GTGCCAG                         CGACGATGAAGGACAAGCGTGGGCTCGAGGACGCCGGCGACGGGCGCCCT
genomic: CTCCGGTTCCGGCGGCCGAGCCAGG--TGAAC-GATCTCTCCAGT-CC-Ggtccccccct ... ttcgtgccagCGACGATGAAGGACAAGCGTGGGCTCGAGGACGCCGGCGACGGGCGCCCT
EST: gi|149000276|gb|EE037432.2|EE037432
EST:     CTCCGGTTCCGGCGGCCGAGCCAGGTTTGCTCGGGTCT-T-C-GTGCCAG                         CGACGATGAAGGACAAGCGTGGGCTCGAGGACGCCGGCGACGGGCGCCCT
genomic: CTCCGGTTCCGGCGGCCGAGCCAGG--TGAAC-GATCTCTCCAGT-CC-Ggtccccccct ... ttcgtgccagCGACGATGAAGGACAAGCGTGGGCTCGAGGACGCCGGCGACGGGCGCCCT
EST: gi|149075355|gb|EE163864.2|EE163864
EST:     CTCCGGTTCCGGCGGCCGAGCCAGGTTTGCTCGGGTCT-T-C-GTGCCAG                         CGACGATGAAGGACAAGCGTGGGCTCGAGGACGCCGGCGACGGGCGCCCT
genomic: CTCCGGTTCCGGCGGCCGAGCCAGG--TGAAC-GATCTCTCCAGT-CC-Ggtccccccct ... ttcgtgccagCGACGATGAAGGACAAGCGTGGGCTCGAGGACGCCGGCGACGGGCGCCCT
EST: gi|149014700|gb|EE044372.2|EE044372
EST:     CTCCGGTTCCGGCGGCCGAGCCAGGTTTGCTCGGGTCT-T-C-GTGCCAG                         CGACGATGAAGGACAAGCGTGGGCTCGAGGACGCCGGCGACGGGCGCCCT
genomic: CTCCGGTTCCGGCGGCCGAGCCAGG--TGAAC-GATCTCTCCAGT-CC-Ggtccccccct ... ttcgtgccagCGACGATGAAGGACAAGCGTGGGCTCGAGGACGCCGGCGACGGGCGCCCT
EST: gi|76910443|gb|DV163876.1|DV163876
EST:     CTCCGGTTCCGGCGGCCGAGCCAGGTTTGCTCGGGTCT-T-C-GTGCCAG                         CGACGATGAAGGACAAGCGTGGGCTCGAGGACGCCGGCGACGGGCGCCCT
genomic: CTCCGGTTCCGGCGGCCGAGCCAGG--TGAAC-GATCTCTCCAGT-CC-Ggtccccccct ... ttcgtgccagCGACGATGAAGGACAAGCGTGGGCTCGAGGACGCCGGCGACGGGCGCCCT
EST: gi|148956501|gb|EC902338.2|EC902338
EST:     CTCCGGTTCCGGCGGCCGAGCCAGGTTTGCTCGGGTCT-T-C-GTGCCAG                         CGACGATGAAGGACAAGCGTGGGCTCGAGGACGCCGGCGACGGGCGCCCT
genomic: CTCCGGTTCCGGCGGCCGAGCCAGG--TGAAC-GATCTCTCCAGT-CC-Ggtccccccct ... ttcgtgccagCGACGATGAAGGACAAGCGTGGGCTCGAGGACGCCGGCGACGGGCGCCCT
EST: gi|26557412|gb|CA829647.1|CA829647
EST:     CTCCGGTTCCGGCGGCCGAGCCAGGTTTGCTCGGGTCT-T-C-GTGCCAG                         CGACGATGAAGGACAAGCGTGGGCTCGAGGACGCCGGCGACGGGCGCCCT
genomic: CTCCGGTTCCGGCGGCCGAGCCAGG--TGAAC-GATCTCTCCAGT-CC-Ggtccccccct ... ttcgtgccagCGACGATGAAGGACAAGCGTGGGCTCGAGGACGCCGGCGACGGGCGCCCT