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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCGTAATTTCTCTTCCCCCGTCGAACTGCCTATTTTTCTTTCGTGGATGGGATGTGGACCTTTGgtagtatatctgatcccgtttacggttaagctaggcagtgttttgtttttgtttttgtttttgtttggggagggggtttggattcgattgctctggattc...

Basic information

species Zea mays
transcript GRMZM2G018177_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018177_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 1
---TGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCGTAATTTCTCTTCCCCCGTCGAACTGCCTATTTTTCTTTCGTGGATGGGATGTGGACCTTTGgtagtatatctgatcccgtttacggttaagctaggcagtgttttgtttttgtttttgtttttgtttggggagggggtttggattcgatt---gctctggattc---
   |   || |     |  |       ||  |  |       ||||     |  |  ||    |  | |      |  ||||| | ||| |  ||||  |  | || | | | |    |  ||   | || |  |    |||    |||| |||| | |     ||  |  ||||    ||||  ||   ||   | ||||||      
CTCTTCCCCCCCCCCCCCCCCCCCCCCGCGTCCAGTTCCATCTAATCAGCTTCTCGTCG--AGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCg-taattttttt----ctcttcctgcttgaaatctctagtcgcatgttcttgtgtct--cggtgactcaggagaatttttgatttttttttctgttctggaacgcga

upper sequence: GRMZM2G018177_T02 (Zea mays), 5'ss of exon 1
lower sequence: PP1S3_334V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCGTAATTTCTCTTCCCCCGTCGAACTGCCTATTTT--TCTTTCGTGGATGGGATGTGGACCTTTGgtagtatatctgatcccgtttacggttaagctaggcagtgttttgtttttgtttttgtttttgt-ttggggagggggtttggattcgattgctctggattc-
    |||  |    || |    |  |   |    | | ||  ||||            ||  ||          | |||||| | ||| |  ||||  |  |  ||| |   ||  ||| |      | | | ||| |    ||||  ||   || |       || ||   ||     | |   |||| ||| |  | |||  
CTACCCGTCACCGATTTGACCATCCCGCTTCTCCA-GTGTGGTTTCCGCAGGTTTCAGGATGTGTTCGCGGAAGTTTTTCGTTGGTGGCAACTGGAAATGCgtcagtcttcatgtccccttccttattgatgatagacttcatttt--ttccattgtgagcagagtattcatgaatttttgtatcttcggttg-tgagaatttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32908102|gb|CF012915.1|CF012915
EST:     CCCCCGTCGAACTGCCTATTTTTCTTTCGTGGATGGGATGTGGACCTTTG                         AATGGAACCGCAGATCAGGTTGAGAAGATTGTCAAAACCCTGAATGAAGGA
genomic: CCCCCGTCGAACTGCCTATTTTTCTTTCGTGGATGGGATGTGGACCTTTGgtagtatatc ... atgcgtgcagAATGGAACCACAGATCAGGTTGAGAAGATTGTCAAAACCCTGAATGAAGGA