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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGATTCAGATCGCGGCCGGTGCGAACCCACGAAGGCACGAACGGTAGAACCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttttccaagatcgccatgctcgatacctcatatcgatttccgccagcggttttcctcatttttttctctccctctcttgcccggtgatcggtcgggatcgattcgagcag

Basic information

species Zea mays
transcript GRMZM2G017941_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211169637|gb|FL169510.1|FL169510
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|149084465|gb|EE173923.2|EE173923
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211172993|gb|FL169536.1|FL169536
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211171318|gb|FL169524.1|FL169524
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211169635|gb|FL169508.1|FL169508
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|149108720|gb|EE292928.2|EE292928
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211172991|gb|FL169534.1|FL169534
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|71329488|gb|DR801466.1|DR801466
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211171321|gb|FL169527.1|FL169527
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCANGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211174667|gb|FL169548.1|FL169548
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211169640|gb|FL169513.1|FL169513
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211171310|gb|FL169516.1|FL169516
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|149013784|gb|EE043248.2|EE043248
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211171315|gb|FL169521.1|FL169521
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|91877946|gb|EB407903.1|EB407903
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211171316|gb|FL169522.1|FL169522
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211171312|gb|FL169518.1|FL169518
EST:     TGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: TGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|93281025|gb|EB673289.1|EB673289
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211171322|gb|FL169528.1|FL169528
EST:     CCCGACCGAGCGCGGCAGCGCAMACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|78106618|gb|DV525036.1|DV525036
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211169633|gb|FL169506.1|FL169506
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|89756714|gb|DY686644.1|DY686644
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|101399852|gb|EB821772.1|EB821772
EST:     CCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211172995|gb|FL169538.1|FL169538
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211172994|gb|FL169537.1|FL169537
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211172988|gb|FL169531.1|FL169531
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211169634|gb|FL169507.1|FL169507
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCANGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211169628|gb|FL169501.1|FL169501
EST:     CCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGG
genomic: CCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGG
EST: gi|211169632|gb|FL169505.1|FL169505
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211171320|gb|FL169526.1|FL169526
EST:     CCCGACCGAGCGCGGCAGCGCAWACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211169641|gb|FL169514.1|FL169514
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211174666|gb|FL169547.1|FL169547
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAA-GG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTGCTCGTCGCAGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211171323|gb|FL169529.1|FL169529
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGGCAGTGCTGGGCGGCGGTCCTCGTCGCGGCGCAGG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCAT-GGGCAGTGCT-GGCGGCGGTCCTCGTCGCGGCGCAGG
EST: gi|211171311|gb|FL169517.1|FL169517
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|149072392|gb|EE160666.2|EE160666
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211172996|gb|FL169539.1|FL169539
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|148982778|gb|EE028604.2|EE028604
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
EST: gi|211172987|gb|FL169530.1|FL169530
EST:     CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGG                         ATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG
genomic: CCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 69

CGGATTCAGATCGCGGCCGGTGCGAACCCACGAAGGCACGAACGGTAGAACCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTGGCGTCTGCGGCGCCGGTCACGGCGCCAGCGTTCCTCTGGGCGCCTAAGA


Block sizes: 49 (upstream exon), 37 (downstream exon)
Score: 201

CGGATTCAGATCGCGGCCGGTGCGAACCCACGAAGGCACGAACGGTAGAACCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTGGCGTCTGCGGCGCCGGTCACGGCGCCAGCGTTCCTCTGGGCGCCTAAGA


Block sizes: 49 (upstream exon), 27 (downstream exon)
Score: 90

CGGATTCAGATCGCGGCCGGTGCGAACCCACGAAGGCACGAACGGTAGAACCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTGGCGTCTGCGGCGCCGGTCACGGCGCCAGCGTTCCTCTGGGCGCCTAAGA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 142

CGGATTCAGATCGCGGCCGGTGCGAACCCACGAAGGCACGAACGGTAGAACCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttt ... attcgagcagATGGCGGCGGCATGGGCAGTGCTGGCGGCGGTCCTCGTCGCGGCGCAGGTGGCGTCTGCGGCGCCGGTCACGGCGCCAGCGTTCCTCTGGGCGCCTAAGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGATTCAGATCGCGGCCGGTGCGAACCCACGAAGGCACGAACGGTAGAACCCGACCGAGCGCGGCAGCGCAAACCTCCGATCCCTGCTGCGAGCAAGGGgtaaggtttttccaagatcgccatgctcgatacctcatatcgatttccgccagcggttttcctcatttttttctctccctctcttgcccggtgatcggtcgggatcgattcgagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG