1 5' 3' | 2 5' 3' | 3 5' 3' |
TGAGCGGCAGCTGGAGCAGCAGCTGCAGGAGCAGCGGTCCTCCCTCGCCGCGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAGgtgcgtcgcggtatcaccatctcatcgacccgcctctcctaatcttatcctaccgcggcccctggttgctaactccctcgcaactgaaccgactactagg...
species | Zea mays |
transcript | GRMZM2G017923_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAG GTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTCEST: gi|78088366|gb|DV516759.1|DV516759
genomic: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAGgtgcgtcgcg ... ttgtttaaagGTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTC
EST: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAG GTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTCEST: gi|149081356|gb|EE170470.2|EE170470
genomic: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAGgtgcgtcgcg ... ttgtttaaagGTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTC
EST: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAG GTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTCEST: gi|149073984|gb|EE162314.2|EE162314
genomic: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAGgtgcgtcgcg ... ttgtttaaagGTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTC
EST: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAG GTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTCEST: gi|74245804|gb|DT653718.1|DT653718
genomic: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAGgtgcgtcgcg ... ttgtttaaagGTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTC
EST: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAG GTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTCEST: gi|149110259|gb|EE190315.2|EE190315
genomic: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAGgtgcgtcgcg ... ttgtttaaagGTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTC
EST: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAG GTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTCEST: gi|148932219|gb|EC875717.2|EC875717
genomic: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAGgtgcgtcgcg ... ttgtttaaagGTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTC
EST: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAG GTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTCEST: gi|148999333|gb|EE036269.2|EE036269
genomic: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAGgtgcgtcgcg ... ttgtttaaagGTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTC
EST: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAG GTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTC
genomic: CGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAGgtgcgtcgcg ... ttgtttaaagGTTCATGAGGAGCTTCTTGCTGCGATTAAGGATGCCGAGGAGGGTCTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCGGCAGCTGGAGCAGCAGCTGCAGGAGCAGCGGTCCTCCCTCGCCGCGGTCGACGAGGCCCTCGCCGCCGACCCCTCCAACGCCGACCTCCTCGAGgtgcgtcgcggtatcaccatctcatcgacccgcctctcctaatcttatcctaccgcggcccctggttgctaactccctcgcaactgaaccgactactagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC