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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACCACAGAGTCCTGTTCCCTGAAGCCTGCGCCGACTGCTCGGCCACCTCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgtcaccgcttccctgcccttctcatatgcacattctctctctcaaatttgcgatgcttgtcctggcttcgccttgaattgaccaattggatt...

Basic information

species Zea mays
transcript GRMZM2G017853_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74233405|gb|DT641319.1|DT641319
EST:     TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
EST: gi|211481043|gb|FL122934.1|FL122934
EST:     TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
EST: gi|91051136|gb|EB161554.1|EB161554
EST:     TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
EST: gi|91871463|gb|EB401433.1|EB401433
EST:     TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
EST: gi|71437097|gb|DR818147.1|DR818147
EST:     TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
EST: gi|76927174|gb|DV171165.1|DV171165
EST:     CTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: CTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
EST: gi|78082079|gb|DV510491.1|DV510491
EST:     TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
EST: gi|71310883|gb|DR791744.1|DR791744
EST:     TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTTTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
EST: gi|148975423|gb|EE025724.2|EE025724
EST:     TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
EST: gi|78085442|gb|DV513835.1|DV513835
EST:     TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
EST: gi|50336042|gb|CO531168.1|CO531168
EST:     TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
EST: gi|101382998|gb|EB813552.1|EB813552
EST:     TTGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
EST: gi|78089274|gb|DV517648.1|DV517648
EST:     TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
EST: gi|71764490|gb|DR962427.1|DR962427
EST:     TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
EST: gi|89251154|gb|DY622940.1|DY622940
EST:     TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCG                         GGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC
genomic: TCGCCTCCGCTCGCTCGCCGGCCGGGCGCCTCTTGTCTGCGCCTCTCTCGgtaaccgtgt ... cttcttgcagGGATATCTCATGATAAAGGGTTCGACATTTCTGACCCCAATGTTGTTGGAC