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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCACGGCCAGCCGCCCCATGCGCCGCCTCGCCCTCCTCCTCGCCCTCAACGTTGCCTACTCTGCCACCGAGTTCGCCATCGGCCTCTTCACCGGACGCgtaggtattgcatcaacaagggctccatgactcagattacgacatagttaattgatcctagggcttcgtcaatcgattcattccaagcacttctgcatgc...

Basic information

species Zea mays
transcript GRMZM2G017365_T09
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017365_T09 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g58580.1 (Oryza sativa), 5'ss of exon 1
CGCCACGGCCAGCCGCCCCATGCGCCGCCTCGCCCTCCTCCTCGCCCTCAACGTTGCCTACTCTGCCACCGAGTTCGCCATCGGCCTCTTCACCGGACGCgtaggtattgcatcaacaagggctccatgactcagattacgacatagttaattgatcctagggcttcgtcaatcgattcattccaagcacttctgcatgc
       |||| |||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||||||| |||||||||||||| |||| |  |||||||||   | |  |  ||     |    |||   | | | ||  | |  | | |||  |      |     || |||| || ||               
----CTCGCCACCCGCCCCATGCGCCGCCTCGCCCTCCTCATCGCTCTCAACGTCGCCTACTCCGCCACCGAGCTCGCCATCGGCCTCCTCACTGCCCGCGTAGgt-cggtaatactaatactactgctactgctactgctactcatt--actcatctcaatcacactcttctccattcgtttcag--------------