1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCCTGTACTCAGCCCGCTGCTTCTCAGTCCACTTCATCCACAGCTCCTCTTCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTGgtaagcaatcatatccgagcttgcttggatgcctggattccctagtccaaagggctttgttgccaatcgaaccctaaaatccttcttctgcttcgttcag...
species | Zea mays |
transcript | GRMZM2G017254_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTG GCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACTEST: gi|93012276|gb|EB637796.1|EB637796
genomic: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTGgtaagcaatc ... tgtctaatagGCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACT
EST: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTG GCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACTEST: gi|211083302|gb|FL091158.1|FL091158
genomic: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTGgtaagcaatc ... tgtctaatagGCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACT
EST: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTGG GCACAACGAAC-ATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACEST: gi|88752415|gb|DY536556.1|DY536556
genomic: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTT-Ggtaagcaatc ... tgtctaatagGCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTAC
EST: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTG GCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACTEST: gi|71303979|gb|DR788111.1|DR788111
genomic: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTGgtaagcaatc ... tgtctaatagGCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACT
EST: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTG GCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACTEST: gi|71308449|gb|DR790459.1|DR790459
genomic: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTGgtaagcaatc ... tgtctaatagGCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACT
EST: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTG GCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACTEST: gi|211083301|gb|FL091157.1|FL091157
genomic: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTGgtaagcaatc ... tgtctaatagGCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACT
EST: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTGG GCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACEST: gi|148939370|gb|EC883899.2|EC883899
genomic: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTT-Ggtaagcaatc ... tgtctaatagGCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTAC
EST: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTG GCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACTEST: gi|211083304|gb|FL091160.1|FL091160
genomic: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTGgtaagcaatc ... tgtctaatagGCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACT
EST: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTGG GCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACEST: gi|149108502|gb|EE292810.2|EE292810
genomic: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTT-Ggtaagcaatc ... tgtctaatagGCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTAC
EST: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTG GCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACTEST: gi|78089523|gb|DV517897.1|DV517897
genomic: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTGgtaagcaatc ... tgtctaatagGCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACT
EST: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTG GCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACTEST: gi|60348333|gb|DN215306.1|DN215306
genomic: TCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTGgtaagcaatc ... tgtctaatagGCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACT
EST: CGTCCGGGCACGGTAGTCTCGCCTTCGTTTTG GCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACT
genomic: CGTCCGGGCACGGTAGTCTCGCCTTCGTTTTGgtaagcaatc ... tgtctaatagGCACAACGAACAATTACTCTAGAAGAGTTGTACTCTTTGGTGTGCCGTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTGTACTCAGCCCGCTGCTTCTCAGTCCACTTCATCCACAGCTCCTCTTCTCTCGGTCTAGAGATCCGTCCGGGCACGGTAGTCTCGCCTTCGTTTTGgtaagcaatcatatccgagcttgcttggatgcctggattccctagtccaaagggctttgttgccaatcgaaccctaaaatccttcttctgcttcgttcag
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