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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGAATAATGGTCATCATGTTGATTATGATCAACGGCCTGATATCTTTAGgttggttatattctcattagctgcagtttccattaataaatggtcttcgttaacctatcctcttgtttctttttgcag

Basic information

species Zea mays
transcript GRMZM2G017204_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017204_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g07560.1 (Oryza sativa), 5'ss of exon 9
----------GAGAGAATAAT--GGTCATCATGTTGATTATGATCAACGGCCTGATATCTTTAGgttggttatattctcat--tagctgcagttt-ccattaata-aatggtcttcgttaacctatcctcttgtttctttttgcag
          ||| || | ||  || || |||||||||||||| ||| |||||||||||||||||||||  ||||||||    || ||||  | |  |  | ||| | || | ||   | |  | |    | |||| ||||     
CATCGAAATGGAGGGAGTCATCAGGGCAACATGTTGATTATGACCAAAGGCCTGATATCTTTAGgttggcaatattctctctgtacctgctatctgtctctcatatagtgctttttacttatttttatcttcgttttttttcag--