1 5' 3' | 2 5' 3' | 3 5' 3' |
GGCGAGGCTGACGGAGATAGCGCAGGAGGTGGAGGCGCGGCAGCGCACGGCGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATGgtgaggcatctttaggtttatttcacgcgcgcgcagcgcaccattattagtcgttttcagctcgggctcggatttaatttgcgtgtatatatggtag
species | Zea mays |
transcript | GRMZM2G017087_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATG GAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGEST: gi|211382575|gb|FK954728.1|FK954728
genomic: CGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATGgtgaggcatc ... tatatggtagGAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCG
EST: CGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATG GAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGEST: gi|21987869|gb|BQ779397.1|BQ779397
genomic: CGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATGgtgaggcatc ... tatatggtagGAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCG
EST: CGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATG GAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGEST: gi|211385208|gb|FK954740.1|FK954740
genomic: CGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATGgtgaggcatc ... tatatggtagGAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCG
EST: CGCTCGGCGGCCTGGCCGCTGCGACGGANCCGGAGCTGGACCAGTTCATG GAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCG
genomic: CGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATGgtgaggcatc ... tatatggtagGAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGAGGCTGACGGAGATAGCGCAGGAGGTGGAGGCGCGGCAGCGCACGGCGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATGgtgaggcatctttaggtttatttcacgcgcgcgcagcgcaccattattagtcgttttcagctcgggctcggatttaatttgcgtgtatatatggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA