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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGTGCCTGTGCCTGTGCCTGTGCTGCCCCCATTCCTTTCTCCTCCAGCAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcctctctccgctcctccgcctccgtccccatcctccccccccccctctatcgatctcgtcgcccccgcatcctccggttctggttcgaatcgg...

Basic information

species Zea mays
transcript GRMZM2G017086_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211522096|gb|FL426854.1|FL426854
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211512097|gb|FL429023.1|FL429023
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211493528|gb|FL393023.1|FL393023
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTW
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211043164|gb|FL426037.1|FL426037
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACC-NNGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211020022|gb|FL404266.1|FL404266
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211140278|gb|FL369584.1|FL369584
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211542655|gb|FL412583.1|FL412583
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCG-NGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211144966|gb|FL424885.1|FL424885
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|78121540|gb|DV539924.1|DV539924
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211168209|gb|FL421347.1|FL421347
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211449542|gb|FL376102.1|FL376102
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211504148|gb|FL387155.1|FL387155
EST:     AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCKTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211408393|gb|FL407128.1|FL407128
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211066798|gb|FL430461.1|FL430461
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211133807|gb|FL389465.1|FL389465
EST:     AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211513751|gb|FL391725.1|FL391725
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211321831|gb|FL416221.1|FL416221
EST:     AACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: AACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211059996|gb|FL387688.1|FL387688
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211455945|gb|FL376150.1|FL376150
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211099805|gb|FL386855.1|FL386855
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211008625|gb|FL395313.1|FL395313
EST:     AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211106564|gb|FL394472.1|FL394472
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211037648|gb|FL421296.1|FL421296
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211219147|gb|FL370888.1|FL370888
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211141642|gb|FL394943.1|FL394943
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211085323|gb|FL409653.1|FL409653
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211254374|gb|FL402662.1|FL402662
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|74240015|gb|DT647929.1|DT647929
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211431557|gb|FL401073.1|FL401073
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211141962|gb|FL418179.1|FL418179
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211536230|gb|FL396283.1|FL396283
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211527639|gb|FL412989.1|FL412989
EST:     AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211335073|gb|FL428116.1|FL428116
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|31998167|gb|CD661962.1|CD661962
EST:     AACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: AACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211459123|gb|FL410721.1|FL410721
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211379399|gb|FL389227.1|FL389227
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTTCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211076695|gb|FL396856.1|FL396856
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGYCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211036892|gb|FL381576.1|FL381576
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211121494|gb|FL373631.1|FL373631
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|50332356|gb|CO527482.1|CO527482
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211521051|gb|FL387963.1|FL387963
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA