1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGAGCAAGAACAGCAATTGGCTTATCAGGATAAACTTGTGGAATGGACAAAGGACAGGAAGAATGCATTAGAATCTTATGTATATGACACCCGTAACAAGgtagatctgcaaccttttgcttttttctgtaactatttttgtggcttatagaatgttttctag
species | Zea mays |
transcript | GRMZM2G016886_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGACAGGAAGAATGCATTAGAATCTTATGTATATGACACCCGTAACAAG CTTTCTGAGAGGTACCGGAGCTTTGCTACTGATTCAGAAAGGGAACAAATCEST: gi|211096629|gb|FL238716.1|FL238716
genomic: AGGACAGGAAGAATGCATTAGAATCTTATGTATATGACACCCGTAACAAGgtagatctgc ... tgttttctagCTTTCTGAGAGGTACCGGAGCTTTGCTACTGATTCAGAAAGGGAACAAATC
EST: AGGACAGGAAGAATGCATTAGAATCTTATGTATATGACACCCGTAACAAG CTTTCTGAGAGGTACCGGAGCTTTGCTACTGATTCAGAAAGGGAACAAATCEST: gi|211096632|gb|FL238719.1|FL238719
genomic: AGGACAGGAAGAATGCATTAGAATCTTATGTATATGACACCCGTAACAAGgtagatctgc ... tgttttctagCTTTCTGAGAGGTACCGGAGCTTTGCTACTGATTCAGAAAGGGAACAAATC
EST: AGGACAGGAAGAATGCATTAGAATCTTATGTATATGACACCCGTAACAAG CTTTCTGAGAGGTACCGGAGCTTTGCTACTGATTCAGAAAGGGAACAAATCEST: gi|6012672|gb|AW062109.1|AW062109
genomic: AGGACAGGAAGAATGCATTAGAATCTTATGTATATGACACCCGTAACAAGgtagatctgc ... tgttttctagCTTTCTGAGAGGTACCGGAGCTTTGCTACTGATTCAGAAAGGGAACAAATC
EST: AGGACAGGAAGAATGCATTAGAATCTTATGTATATGACACCCGTAACAAG CTTTCTGAGCAGGTACCGGAGCTTTGCTACTGATTCAGAAAGGGAACAAATEST: gi|32912528|gb|CF017340.1|CF017340
genomic: AGGACAGGAAGAATGCATTAGAATCTTATGTATATGACACCCGTAACAAGgtagatctgc ... tgttttctagCTTTCTGAG-AGGTACCGGAGCTTTGCTACTGATTCAGAAAGGGAACAAAT
EST: AGGACAGGAAGAATGCATTAGAATCTTATGTATATGACACCCGTAACAAG CTTTCTGAGAGGTACCGGAGCTTTGCTACTGATTCAGAAAGGGAACCAAAT
genomic: AGGACAGGAAGAATGCATTAGAATCTTATGTATATGACACCCGTAACAAGgtagatctgc ... tgttttctagCTTTCTGAGAGGTACCGGAGCTTTGCTACTGATTCAGAAAGGGAA-CAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGCAAGAACAGCAATTGGCTTATCAGGATAAACTTGTGGAATGGACAAAGGACAGGAAGAATGCATTAGAATCTTATGTATATGACACCCGTAACAAGgtagatctgcaaccttttgcttttttctgtaactatttttgtggcttatagaatgttttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA